Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20141
         (536 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   0.98 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.0  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   6.9  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   9.1  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 173 REG*DRRCSFALPHQKASIQRSHLRPELLEELEAFTKLGPDFTAEIRHAGILSFASLLHK 352
           +EG +   + A+P  K  +Q  +  PEL E L+A   +  D       AG     S L+K
Sbjct: 175 KEGKNWEITMAVPIAKFRLQEGYHVPELCELLDAIHVMSYDLRG--NWAGFADSHSPLYK 232


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 272 PPALRATLVEGGYVEWKLSDEGEQS 198
           PP L    V  G+  WK S +G  S
Sbjct: 52  PPPLADAAVGKGFHPWKKSPQGAPS 76


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 356 LSYAASWRNSRSRRGVFPP*N 294
           L + ASW   R+  G F P N
Sbjct: 27  LCFFASWAGYRNGEGSFKPQN 47


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 260 EELEAFTKLGPDFTAEIRHAGILSFASLL 346
           E  E FT L  +     RH G+L   S+L
Sbjct: 184 EHKEQFTALVREIRNAFRHDGLLLTMSVL 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,588
Number of Sequences: 336
Number of extensions: 3197
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)