Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20141
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    30   0.25 
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    29   0.58 
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    29   0.58 
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   1.3  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   3.1  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   5.4  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   9.5  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.5  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -2

Query: 484  IAYVAQTLEPHHPVQVLRAITIHSEIFHDYIVNVVLFDK 368
            I+ V Q LEP HP ++ + I IH E+  D + ++V F++
Sbjct: 2380 ISSVGQ-LEPWHPTELDQKIRIHPEVKVDSLTSLVTFNE 2417


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 90  TSRN--IFLEALPHARSEACARFIKYLVIEEKDKIEDAALLSLIRKLP 227
           TSR+  + ++ LP+   EA   F  YLV+   D +ED   L L +KLP
Sbjct: 45  TSRSFAVVIKELPNGIREAVMIF--YLVLRGLDTVEDDMTLPLDKKLP 90


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 454 HHPVQVLRAITIHSEIFHDYIVNVVLFDK*KFNCLM 347
           ++  Q   A+ IH E   DY+  + LF K K N LM
Sbjct: 7   YNVTQSYAAVAIHKEQTADYVEAIALFQKAKRNILM 42


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +3

Query: 105 FLEALPHARSEACARFIKYL----VIEEKDKIEDAALLSLIRKLPFNVATFDQSCSKSWR 272
           F  A+ H+  E C  +IKYL     + +  +IED  + S I     N   F    S S+ 
Sbjct: 299 FCTAVAHSIREQCQMYIKYLSLIGYLFDGSEIEDEEVRSYILPPLKNTLRFSDMESSSFA 358

Query: 273 PL 278
           P+
Sbjct: 359 PM 360


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +2

Query: 221 ASIQRSHLRPELLEELEAFTKLGPDFTAEIRHAGILSFASLLHK-TIEFSLIKQDY-IDN 394
           +S+ R HL P       +F+   P+F+       ++      HK  +   L    Y +D+
Sbjct: 514 SSVMRKHLTPSAFITTASFSTYNPEFSCADSFGRVIVCKRKNHKENLPAQLANGIYRLDD 573

Query: 395 VVVKYFRMYSDCPQYLDR-MVWLQGLCNIGYSAEGY 499
            +V    +++     L R  V L  + NIG+   GY
Sbjct: 574 TLVLEGTLHAQYYIDLKRGRVTLNQMSNIGFVCIGY 609


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 251 ELLEELEAFTKLGPDFTAEIRHAGILSFASLLHKTIEFSLIKQDYIDNVVVKYF 412
           E+LE++     L P+  A + H  ++         +EF+   QD+IDN V   F
Sbjct: 235 EILEQVRFNKDLSPEERARLLHITVVGGGPT---GMEFAAEMQDFIDNDVKDMF 285


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 272 PPALRATLVEGGYVEWKLSDEGEQ 201
           P ALR  L+E     W+L DE  Q
Sbjct: 9   PEALRRLLIETPAAIWQLDDESAQ 32


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 194  CSFALPHQKASIQRSHLRPELLEELEAFTKLGPDFTAEIRHAGILSFAS 340
            C F+L    A++   + RPE++E+     K G  +  E+RH  I + A+
Sbjct: 959  CFFSLSQAAAALGEPYCRPEIIEQ-----KDGHLYFEELRHPCINASAA 1002


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,742
Number of Sequences: 5004
Number of extensions: 49185
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)