Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20141
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0860 + 28345120-28345266,28345376-28345424,28345519-283456... 32 0.33
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 30 1.0
11_01_0283 - 2095291-2095566,2095962-2096348,2096523-2096881,209... 29 1.8
08_02_1203 + 25262875-25263492,25264761-25264813,25265308-252653... 29 2.3
04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501 29 2.3
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 29 2.3
04_03_0772 - 19438910-19439209,19439692-19439828,19441334-194415... 28 4.1
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20... 28 4.1
06_03_1367 + 29607008-29607501,29608726-29608906,29609006-296090... 28 5.4
11_06_0205 + 21198533-21199162 27 7.2
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 27 7.2
04_01_0563 - 7216923-7217300,7217401-7217544,7217680-7218729 27 7.2
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 27 7.2
04_01_0282 - 3764110-3764666,3765117-3765180 27 9.5
02_04_0564 + 23905196-23905413,23905631-23905766,23906005-239060... 27 9.5
01_05_0760 - 24977608-24978708 27 9.5
>03_05_0860 +
28345120-28345266,28345376-28345424,28345519-28345641,
28345759-28345931
Length = 163
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 190 KMQLCSPSSESFHST*PPSTRVARRAGGLYQARPG 294
K LCS + ES H T PP R + G LY PG
Sbjct: 51 KAGLCSRTCESDHCTTPPLLRYGKYCGILYSGCPG 85
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 368 VKIQLSYAASWRNSRSRRGVFPP*NPGLA 282
++I L YA +WR+ RS G PP P LA
Sbjct: 586 IRIMLKYAFAWRSLRSTWGPTPPPFPRLA 614
>11_01_0283 -
2095291-2095566,2095962-2096348,2096523-2096881,
2097275-2097398,2097480-2097548,2098536-2098584,
2099185-2099299,2099823-2099872,2099969-2100106,
2101136-2101197,2102066-2102180,2103433-2103664,
2103748-2103826,2103925-2103993,2104079-2104171,
2104577-2104622,2105223-2105268,2105354-2105411,
2105577-2105615,2105712-2105783,2105930-2106021,
2106824-2106923
Length = 889
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -1
Query: 314 GVFPP*NPGLAW*RP---PALRATLVEGGYV-EWKLSDEGEQSCIF 189
G PP +P AW +P A++A +V GY EW GEQ +
Sbjct: 655 GPIPPSDPAQAWPQPNAYDAIQAQMVAAGYQGEWSGYQYGEQQMAY 700
>08_02_1203 +
25262875-25263492,25264761-25264813,25265308-25265373,
25265581-25265695,25265860-25265970
Length = 320
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 86 GDIQEYLPGGAPSCQERGLR*VHQVPGDRREG*DRRCSFALPHQK 220
GD+ +LP PS R L Q P + +G +R +P Q+
Sbjct: 12 GDLSHFLPPPTPSSPSRSLGRRRQPPAQQAQGQGKRAKGVVPWQE 56
>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
Length = 506
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +3
Query: 114 ALPHARSEACARFIKYLVIEEKDKIE---DAALLSLIRKLPFNVATFDQSCSKSWRPL 278
ALP A AR + D+I DA L ++ +LP A + S+ WRPL
Sbjct: 29 ALPDPPVSAAARLYALAPHDAVDRISALPDALLRRVVSRLPVKDAARTAALSRRWRPL 86
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 221 ASIQRSHLRPELLEELEAFTKLGPDFTAEIRHAGILSFASLLHKTIEFSLIKQDYIDNVV 400
+S Q ++RP + E + F P T +I + G LSF + + +S I ++ ++V
Sbjct: 612 SSTQPPNIRPPPISESQEFVPEKPAKTPDIINDGQLSFRGVPLEPERYSNISPQHVKDIV 671
Query: 401 V 403
V
Sbjct: 672 V 672
>04_03_0772 -
19438910-19439209,19439692-19439828,19441334-19441570,
19441948-19442149,19442761-19442858,19443082-19443665,
19443725-19443882
Length = 571
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +2
Query: 212 HQKASIQRSHLRPELLEELEAFTKLGPDFTAEIRHAGILSFASLLHKTIEFSLIKQDYID 391
H I L + L E+E L A+++H I+ F + + L+ + +
Sbjct: 284 HNNEEIAVKKLTRKDLREVEREVSL----VAQLQHENIVKFLGHCFRHDKMFLVYEYLSN 339
Query: 392 NVVVKYFRMYSDCPQYLDRMVWL 460
+ +YF+ +DC Q LD WL
Sbjct: 340 GTLSRYFKCSADC-QKLDWPKWL 361
>01_01_0026 +
201042-201110,201252-201359,202511-202639,203164-203440,
203543-203647,203730-203875,204042-204149,204290-204378,
204552-205098
Length = 525
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 170 RREG*D-RRCSFALPHQKASIQRSHLRPELLEELEAFTKLGPDFTAEI 310
R EG D + SF+ P Q AS +++ RP + EE E + DFT+ +
Sbjct: 382 REEGGDIQSFSFSEP-QAASKEKASPRPSITEEWEQLIIIDDDFTSAV 428
>06_03_1367 +
29607008-29607501,29608726-29608906,29609006-29609065,
29609486-29609649,29609723-29609888,29609889-29609957,
29610060-29610155,29610345-29610389,29610765-29610835,
29610996-29611062,29611150-29611200,29611276-29611686
Length = 624
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 147 RFIKYLVIEEKDKIEDAALLSLIRKLPFNVATF 245
+ K L +++ D I L++ +RKLPF +A F
Sbjct: 579 KLFKTLDVDDDDGISKDDLMASLRKLPFMIALF 611
>11_06_0205 + 21198533-21199162
Length = 209
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 85 WRHPGISSWRRSLMPGARPALGSSSTW*SKRRIR*KMQ 198
W HP + RS+ PGAR A +T + R+R K++
Sbjct: 169 WVHPHCFTAARSVAPGARAAQPKQATAMAPPRLRSKLR 206
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 129 RSEACARFIKYLVIEEKDKIEDAALLSLIRKL 224
RS+ IKYLV++E D++ D IRK+
Sbjct: 260 RSKVSLEAIKYLVMDEADRMLDMGFEPQIRKI 291
>04_01_0563 - 7216923-7217300,7217401-7217544,7217680-7218729
Length = 523
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 168 IEEKDKIEDAALLSLIRKLPFNVATFDQSCSKSWRPL 278
++ + DA L +++ +LP A + S+ WRPL
Sbjct: 67 VDRISALPDAILRNIVSRLPVKDAARTAALSRRWRPL 103
>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 189 EDAALLSLIRKLPFNVATFDQSC-SKSWRPLPS*ARILRRKYATP 320
E L I++LP +VA +SC + W+ P +L +Y P
Sbjct: 1034 ETGILPGAIQELPIHVAVIVESCIQREWKRRPLAKHLLESQYFPP 1078
>04_01_0282 - 3764110-3764666,3765117-3765180
Length = 206
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 79 TTWRHPGISSWRRSLMPGARPALGSS 156
T WRH G++S SL P A P++ SS
Sbjct: 156 TWWRHGGVASPPASLPPLAPPSVVSS 181
>02_04_0564 +
23905196-23905413,23905631-23905766,23906005-23906082,
23906627-23906710,23906826-23906894,23906974-23907057,
23907143-23907301,23907922-23908008,23908398-23908502,
23908579-23908701,23908780-23908932,23909248-23909313,
23909398-23909499
Length = 487
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 155 DEPSAGLAPGMRERLQEDIPGCLHVVTG 72
DE S+GL L D PG L++VTG
Sbjct: 303 DEDSSGLRSHTLSILVNDCPGVLNIVTG 330
>01_05_0760 - 24977608-24978708
Length = 366
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 70 APVTTWRHPGISSWRRSLMPGARPALGSSST 162
+P T+ RH SSW R+ +P P SSS+
Sbjct: 151 SPSTSRRHCPSSSWGRARLPRGAPGQYSSSS 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,480,794
Number of Sequences: 37544
Number of extensions: 379718
Number of successful extensions: 982
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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