Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20141
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.79 
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.79 
SB_47054| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)                      27   9.7  
SB_45039| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_20369| Best HMM Match : PRA-PH (HMM E-Value=0.54)                   27   9.7  

>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 224 SIQRSHLRP--ELLEELEAFTKLGPDFTAEIRHAGILSFASLLHKTIEFS 367
           SI+RS LR     L+ +  +  +GP FT    H G++S+AS  +  ++FS
Sbjct: 667 SIRRSELRTVQSFLKNIVEYLIIGPQFT----HVGVISYASDANVELQFS 712


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 153 IKYLVIEEKDKIEDAALLSLIRKLPFNVATFDQSCSKS 266
           +KYL +  K+++ED+ ++ ++ K    V     SCS S
Sbjct: 339 LKYLPVSSKNQLEDSKVMRVVNKWAIAVEEVPSSCSSS 376


>SB_47054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +3

Query: 102 IFLEALPHARSEACARFIKYLVIEEKDKIEDAALLSLIRKLPFN 233
           +F+E      S  C+RF+K LV    D++  +++LSL  K PFN
Sbjct: 168 VFVEHSYDTVSSRCSRFLKGLVPRAHDQLL-SSILSLSAKEPFN 210


>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1154

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 126  ARSEACARFIKYLVIEEKDKIEDAALLSLIRKLPFNVATFDQSCS 260
            A S   A F   LVI+ + K+++  L S+ RKLP  ++T  ++CS
Sbjct: 1052 ASSFVVAEFQLRLVIDRRSKLQEN-LSSMSRKLPAPMSTMLKNCS 1095


>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2143

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 174  EKDKIEDAALLSLIRKLPFNVATFDQSCSKSWRPL 278
            E +++ D     L++++  N +  + SCS+ WR L
Sbjct: 1738 ENERLCDEVYCQLVKQVTSNKSACEDSCSRGWRLL 1772


>SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)
          Length = 770

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 308 IRHAGILSFASLLHKTIEFSLIKQDYIDNVVVKYF--RMYSDCPQYLDRMV 454
           IR  G L+   +LH+TI    IKQ  +D    + +  R  SD P  +  M+
Sbjct: 164 IRFIGELAKLDMLHETILHKCIKQPLVDQYFERIYQIRSRSDLPSRIRFML 214


>SB_45039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 263 LRATLVEGGYVEWKLSDEGEQSC 195
           LR   V+GGY EW    E ++SC
Sbjct: 83  LRHCPVDGGYTEWSEYSECDKSC 105


>SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = +2

Query: 329 SFASLLHKTIEFSLIKQDYIDNVVVKYFRMYSDCPQYLDRMVWLQGLCNIGYSA 490
           +F  L   T     +    +  +VVK+   Y +C    D  VW   LC  G  A
Sbjct: 96  AFKRLSSSTRTIFYVSSSLVIYIVVKFLMSY-ECNLSSDSKVWFWSLCGFGVFA 148


>SB_20369| Best HMM Match : PRA-PH (HMM E-Value=0.54)
          Length = 174

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +3

Query: 21  QLNYTTIIKLFEDLVLGTSYDMETSRNIFLEALPHARSEACARFIK---YLVIEEKDKIE 191
           ++N  T+I   ED     SY    + ++         SEA  RF+K    ++ EE D+I 
Sbjct: 80  RINLATVISNMEDEAHDDSYTSNLNNDVLPAGAEDMGSEATIRFLKAKLRVMQEEMDRIS 139

Query: 192 DA 197
            A
Sbjct: 140 AA 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,211,198
Number of Sequences: 59808
Number of extensions: 400080
Number of successful extensions: 1058
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)