Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20141
(536 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr... 31 0.53
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein. 31 0.53
AC006618-1|AAK68250.1| 762|Caenorhabditis elegans Hypothetical ... 31 0.69
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 28 4.9
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 28 4.9
AF039037-7|AAC48231.3| 441|Caenorhabditis elegans Nuclear hormo... 27 6.5
>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 24 LNYTTIIKLFEDLVLGTSYDMETSRNIFLEALPHARSEACARFIKYLVIEEKDKIEDAAL 203
L + I+ FE LVL + +T NIF++ L H ++ + + V + + IE+A+
Sbjct: 1100 LTFDFFIQRFETLVLESQLSSQTEENIFVQDLMH--TDPMSELYQRKVSKARSAIENAST 1157
Query: 204 L-SLIRKL 224
S++R L
Sbjct: 1158 ARSIVRHL 1165
>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 24 LNYTTIIKLFEDLVLGTSYDMETSRNIFLEALPHARSEACARFIKYLVIEEKDKIEDAAL 203
L + I+ FE LVL + +T NIF++ L H ++ + + V + + IE+A+
Sbjct: 1100 LTFDFFIQRFETLVLESQLSSQTEENIFVQDLMH--TDPMSELYQRKVSKARSAIENAST 1157
Query: 204 L-SLIRKL 224
S++R L
Sbjct: 1158 ARSIVRHL 1165
>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
Length = 2084
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 24 LNYTTIIKLFEDLVLGTSYDMETSRNIFLEALPHARSEACARFIKYLVIEEKDKIEDAAL 203
L + I+ FE LVL + +T NIF++ L H ++ + + V + + IE+A+
Sbjct: 1103 LTFDFFIQRFETLVLESQLSSQTEENIFVQDLMH--TDPMSELYQRKVSKARSAIENAST 1160
Query: 204 L-SLIRKL 224
S++R L
Sbjct: 1161 ARSIVRHL 1168
>AC006618-1|AAK68250.1| 762|Caenorhabditis elegans Hypothetical
protein C45B2.6 protein.
Length = 762
Score = 30.7 bits (66), Expect = 0.69
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +2
Query: 251 ELLEELEAFTKLGPDFTAEIRHAGILSFASLLHKTIEFSLIKQDYIDNVVVKYFRMYSD 427
+LL+E+E +G F H G S S+ I L+K ID+V+ +YFRM D
Sbjct: 467 QLLKEIEKV--VGNKFLRWFNHIGGTSTGSM----ITLGLVKYGNIDHVIRQYFRMKDD 519
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
protein C48B4.4c protein.
Length = 1704
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -1
Query: 185 LILLFDHQV--LDEPSAGLAPGMRERLQE 105
+ L+ D +V LDEP+AG+ PG R+ +Q+
Sbjct: 691 MALIGDSEVVLLDEPTAGMDPGARQDVQK 719
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
protein C48B4.4b protein.
Length = 1691
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -1
Query: 185 LILLFDHQV--LDEPSAGLAPGMRERLQE 105
+ L+ D +V LDEP+AG+ PG R+ +Q+
Sbjct: 678 MALIGDSEVVLLDEPTAGMDPGARQDVQK 706
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
protein C48B4.4a protein.
Length = 1689
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -1
Query: 185 LILLFDHQV--LDEPSAGLAPGMRERLQE 105
+ L+ D +V LDEP+AG+ PG R+ +Q+
Sbjct: 678 MALIGDSEVVLLDEPTAGMDPGARQDVQK 706
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -1
Query: 185 LILLFDHQV--LDEPSAGLAPGMRERLQE 105
+ L+ D +V LDEP+AG+ PG R+ +Q+
Sbjct: 691 MALIGDSEVVLLDEPTAGMDPGARQDVQK 719
>AF039037-7|AAC48231.3| 441|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 204 protein.
Length = 441
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 205 SPSSESFHST*PPSTRVARRAGGLYQARP 291
SP+ ESF PP T+ R++G YQ P
Sbjct: 20 SPALESFIEQKPPKTKSLRKSGKPYQFVP 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,242,631
Number of Sequences: 27780
Number of extensions: 294486
Number of successful extensions: 622
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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