Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20141
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.49 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.49 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   3.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 65   PRHQLRHGDIQEYLPGGAPSCQERGLR*VHQVPGDRREG 181
            P  +LRHGDIQ +  G   +           V GD  EG
Sbjct: 1030 PLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1068


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 65   PRHQLRHGDIQEYLPGGAPSCQERGLR*VHQVPGDRREG 181
            P  +LRHGDIQ +  G   +           V GD  EG
Sbjct: 1026 PLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1064


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 266 ALRATLVEGGYVEWKLSDEGEQSC 195
           A +AT+   G VEWK     + SC
Sbjct: 130 ATKATIYHQGLVEWKPPAIYKSSC 153


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -2

Query: 316 VAYFRRKIRA*LGKGLQLFEQLWSKVATLNGSFL 215
           + +F  K +    +G+ +  + W KV   NG  +
Sbjct: 307 IQFFANKNQKFYERGIMMLPERWQKVIDQNGQHI 340


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 414 ECIVIALNTWTGWCGS 461
           E IV A  TW GW  S
Sbjct: 368 EKIVFAAVTWLGWINS 383


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 266 ALRATLVEGGYVEWKLSDEGEQSC 195
           A +ATL   G VEWK     + SC
Sbjct: 126 ATKATLNYTGRVEWKPPAIYKSSC 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,201
Number of Sequences: 438
Number of extensions: 3449
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)