Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20141
(536 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family pr... 29 1.5
At4g00160.1 68417.m00016 F-box family protein contains F-box dom... 29 2.0
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont... 29 2.0
At5g17670.1 68418.m02071 expressed protein 28 3.4
At5g16290.2 68418.m01904 acetolactate synthase small subunit, pu... 28 3.4
At5g16290.1 68418.m01903 acetolactate synthase small subunit, pu... 28 3.4
At4g15140.1 68417.m02325 expressed protein 28 3.4
At2g31810.3 68415.m03885 acetolactate synthase small subunit, pu... 28 3.4
At2g31810.2 68415.m03884 acetolactate synthase small subunit, pu... 28 3.4
At2g31810.1 68415.m03883 acetolactate synthase small subunit, pu... 28 3.4
At4g36380.1 68417.m05169 cytochrome P450 90C1 (CYP90C1) / rotund... 27 7.9
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 27 7.9
At3g01780.1 68416.m00118 expressed protein est hit, 27 7.9
At2g37585.1 68415.m04611 glycosyltransferase family 14 protein /... 27 7.9
>At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 811
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 24 LNYTTIIKLFEDLVLGTSYDMETSRNIFLEALPHARSEACARFIKYLVIEEKDKIEDAAL 203
L +++ D ++ T + +S+N + L A E C IK+L EE + D AL
Sbjct: 89 LQIESLLPKMRDTIVDTFQFLMSSKNHLPDELSPASLEQCLEKIKHLSYEEISSVIDGAL 148
>At4g00160.1 68417.m00016 F-box family protein contains F-box domain
Pfam:PF00646
Length = 453
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 153 IKYLVIEEKDKIE---DAALLSLIRKLPFNVATFDQSCSKSWRPL 278
++ V+ KD+I DA L+ ++ LP + SK WRPL
Sbjct: 7 LRIRVVMGKDRISELPDALLIKILSFLPTKIVVATSVFSKQWRPL 51
>At3g17920.1 68416.m02282 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 962
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 56 RPGPRHQLRHGDIQEYLPGGAPSCQERGLR*VHQ 157
R GP+H HG+ Y PG PS Q L HQ
Sbjct: 458 RNGPKH---HGETMRYTPGPLPSFQITDLNQKHQ 488
>At5g17670.1 68418.m02071 expressed protein
Length = 309
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 407 YFRMYSDCPQYLDRMVWLQGLCNIGYSAEGYL-RIFM 514
Y D + + + QGLC IG+SA G+L R++M
Sbjct: 98 YLNRIDDAVREANELAQGQGLCLIGHSAGGWLARVYM 134
>At5g16290.2 68418.m01904 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 477
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 161 VLDEPSAGLAPGMRERLQEDIPGCLHVVTGA 69
V DE S+GL L ++PG L+++TGA
Sbjct: 297 VYDEDSSGLRSHTLSLLVANVPGVLNLITGA 327
>At5g16290.1 68418.m01903 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 477
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 161 VLDEPSAGLAPGMRERLQEDIPGCLHVVTGA 69
V DE S+GL L ++PG L+++TGA
Sbjct: 297 VYDEDSSGLRSHTLSLLVANVPGVLNLITGA 327
>At4g15140.1 68417.m02325 expressed protein
Length = 138
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 210 LIRKLPFNVAT-FDQSCSKSWRPLPS*ARILRRKYATPGS*VSPACCIRQL 359
L+ K P N A FD S S W PL L R YA+P S +C R L
Sbjct: 36 LLCKFPDNSAFGFDYSQSSLWSPL------LPRNYASPSDLDSDSCVCRNL 80
>At2g31810.3 68415.m03885 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 469
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 155 DEPSAGLAPGMRERLQEDIPGCLHVVTG 72
DE ++GL L DIPG L++VTG
Sbjct: 311 DEDTSGLRSHTLSLLVNDIPGVLNIVTG 338
>At2g31810.2 68415.m03884 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 492
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 155 DEPSAGLAPGMRERLQEDIPGCLHVVTG 72
DE ++GL L DIPG L++VTG
Sbjct: 311 DEDTSGLRSHTLSLLVNDIPGVLNIVTG 338
>At2g31810.1 68415.m03883 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 491
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 155 DEPSAGLAPGMRERLQEDIPGCLHVVTG 72
DE ++GL L DIPG L++VTG
Sbjct: 311 DEDTSGLRSHTLSLLVNDIPGVLNIVTG 338
>At4g36380.1 68417.m05169 cytochrome P450 90C1 (CYP90C1) /
rotundifolia3 (ROT3) identical to Cytochrome P450 90C1
(ROTUNDIFOLIA3) (SP:Q9M066) [Arabidopsis thaliana];
Length = 524
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 156 KYLVIEEKDKIEDAALLSLIRKLPFNVATFDQSCS 260
+Y E+D+I + + R+LP VAT D S S
Sbjct: 483 RYSWTAEEDEIVSFPTVKMKRRLPIRVATVDDSAS 517
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 27.1 bits (57), Expect = 7.9
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 302 AEIRHAGILSFASLLHKTIEFSL--IKQDYIDNVVVKYFRMYSDCPQYLDRMVWLQGLCN 475
AEIRH L F SLL T++ + ++ D V M S QYL + + + N
Sbjct: 386 AEIRHLHRL-FGSLL-TTMDLCMCRVESSLADKEVGNSETMSSSWSQYLSILKIINSMSN 443
Query: 476 IGYSAEGYLRIFM 514
I A+G L + +
Sbjct: 444 IYQGAKGQLAVML 456
>At3g01780.1 68416.m00118 expressed protein est hit,
Length = 1176
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 33 TTIIKLFEDLVLGTSYDMETSRNIFLEALPHARSEAC 143
T II LFED + + TS+++F E L E+C
Sbjct: 430 TDIISLFEDARIKDDLNSVTSKSLFREELVAMLVESC 466
>At2g37585.1 68415.m04611 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 384
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 194 IFYLILLFDHQVLDEPSAGLAPGMRERLQEDIPGCLHVVTG 72
+F L+L + + S+GLAP + IP ++VTG
Sbjct: 25 LFLLVLTLSSRKPSDSSSGLAPNRNLATKSTIPRFAYLVTG 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,613,288
Number of Sequences: 28952
Number of extensions: 273443
Number of successful extensions: 643
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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