Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20139
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 37 0.014
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 36 0.024
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 36 0.032
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.042
SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027) 35 0.055
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 34 0.096
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39) 34 0.13
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 33 0.17
SB_53933| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 33 0.29
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8) 31 0.68
SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94) 31 1.2
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40) 30 1.6
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 30 1.6
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4) 30 1.6
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 30 2.1
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 29 2.7
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 29 4.8
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 29 4.8
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 29 4.8
SB_39622| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=5.3) 28 6.3
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 28 6.3
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3) 28 6.3
SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 8.4
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 28 8.4
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 28 8.4
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 28 8.4
SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0) 28 8.4
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 28 8.4
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 28 8.4
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 37.1 bits (82), Expect = 0.014
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Frame = +3
Query: 228 AASSTTAQSPGMPMNQPQP-YIPMMPNYSQSQASVTPA--AFPTTAPNLVPTFDMSNFAA 398
A+ S + SPG + P Y P P+YS + S +P ++ T+P+ PT +++
Sbjct: 429 ASPSYSPTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSP 486
Query: 399 TPIQPPPISTGVSVVTPVSLPGMPSI--TVSATLPVSTIKKFTSNNHYTKSKTY 554
T P S S +P P PS T + P S TS ++ S +Y
Sbjct: 487 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 540
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 237 STTAQSPGMPMNQPQP--YIPMMPNYSQSQASVTPAAFPTTAPNLVPT 374
++ + SP P P Y P P+YS S S +P++ P+ NL PT
Sbjct: 557 TSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSS-PSFHHNLRPT 603
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 36.7 bits (81), Expect = 0.018
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +3
Query: 231 ASSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNL-VP-TFDMSNFAATP 404
++ +T +PG P+ P P+ ++++ + + P+T L +P T M N +TP
Sbjct: 169 STPSTPSAPGTPITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTLSMPSTPSMPNTPSTP 228
Query: 405 IQPPPISTGVSVVTPVSLPGMPSITVSATLP 497
P ST + +TP S P PS + ++P
Sbjct: 229 STPSTPSTLSTPITP-STPSTPSTPSTPSMP 258
Score = 36.7 bits (81), Expect = 0.018
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +3
Query: 231 ASSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNL-VP-TFDMSNFAATP 404
++ +T +PG P+ P P+ ++++ + + P+T L +P T M N +TP
Sbjct: 719 STPSTPSAPGTPITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTLSMPSTPSMPNTPSTP 778
Query: 405 IQPPPISTGVSVVTPVSLPGMPSITVSATLP 497
P ST + +TP S P PS + ++P
Sbjct: 779 STPSTPSTLSTPITP-STPSTPSTPSTPSMP 808
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +3
Query: 231 ASSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQ 410
++ +T +PG P P P P + ++ + + P+T P+ T M + +TP
Sbjct: 501 STPSTPSAPGTPGTPSTPSTPSAPGTPSTPSTPSTPSTPST-PSTPSTPSMPSTPSTPST 559
Query: 411 PPPISTGVSVVTPVSL 458
P ST + T V L
Sbjct: 560 PSTPSTPSTPSTLVHL 575
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +3
Query: 231 ASSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQ 410
++ +T +P P P P MP+ + ++ + + P+T P+ T + +TP
Sbjct: 265 STPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPST-PSAPSTPSTPSTPSTPST 323
Query: 411 PPPISTGVSVVTP 449
P ST + TP
Sbjct: 324 PKTPSTPCTPNTP 336
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +3
Query: 231 ASSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQ 410
++ +T +P P P P MP+ + ++ + + P+T P+ T + +TP
Sbjct: 815 STPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPST-PSAPSTPSTPSTPSTPST 873
Query: 411 PPPISTGVSVVTP 449
P ST + TP
Sbjct: 874 PKTPSTPCTPNTP 886
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 36.3 bits (80), Expect = 0.024
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +3
Query: 237 STTAQSPGMPMNQPQP--YIPMMPNYSQSQASVTPA--AFPTTAPNLVPTFDMSNFAATP 404
++ + SP +P N P Y P P+Y+ + S TPA ++ +P+ PT + +++ T
Sbjct: 720 TSPSYSPAIPSNSPASPSYSPASPSYTPASPSYTPASPSYTPASPSYTPT--IPSYSPTS 777
Query: 405 IQPPPISTGVSVVTPVSLPGMPS 473
P S S +P PS
Sbjct: 778 PSYSPTSPSYSPASPSYTSASPS 800
Score = 33.9 bits (74), Expect = 0.13
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Frame = +3
Query: 228 AASSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPA--AFPTTAPN---LVPTFDMSNF 392
A+ S T SP P Y P P+YS + S +PA ++ + +P+ P++ ++
Sbjct: 664 ASPSYTPASPSYTPTSPS-YSPASPSYSPTSPSYSPASPSYTSASPSYSPASPSYSPTSP 722
Query: 393 AATPIQP--PPISTGVSVVTPVSLPGMPSIT 479
+ +P P P S S +P P PS T
Sbjct: 723 SYSPAIPSNSPASPSYSPASPSYTPASPSYT 753
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 35.9 bits (79), Expect = 0.032
Identities = 29/92 (31%), Positives = 39/92 (42%)
Frame = +3
Query: 270 NQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTP 449
+QP PY P S AS TPA P T + V + +TP P V TP
Sbjct: 74 SQPAPYTPA----SGQPASYTPAYTPYTPASTVGRMPPTTSQSTPSPAPFFQQQPLVPTP 129
Query: 450 VSLPGMPSITVSATLPVSTIKKFTSNNHYTKS 545
V+L G + +A P+S +S + Y S
Sbjct: 130 VTLGGTSAPASTAAPPLSYPAPTSSPHAYPYS 161
Score = 29.9 bits (64), Expect = 2.1
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = +3
Query: 240 TTAQS-PG-MPMNQPQPYIPMMPNYSQSQASVTPAA------FPTTAPNLVPTFDMSNFA 395
TT+QS P P Q QP +P + A + AA PT++P+ P
Sbjct: 108 TTSQSTPSPAPFFQQQPLVPTPVTLGGTSAPASTAAPPLSYPAPTSSPHAYPYSPAQVQL 167
Query: 396 ATPIQPPPI-STGVSVVTPVSLPGMPS 473
+TP Q PP ST S V++ PS
Sbjct: 168 STPPQTPPSPSTNASAGGTVTVMATPS 194
>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 35.5 bits (78), Expect = 0.042
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +3
Query: 243 TAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPI 422
+A SP P+ + IP+ Y P +PT P+ P+ S+F + P PP
Sbjct: 104 SAGSPSAPIIKKNTAIPVEDKYPIIAPHHHPHHYPTYPPSSSPS---SSFPSVPPSSPPS 160
Query: 423 STGVS----VVTPVSLPGMPSITVSATLP 497
S+ S V P S P P + S++LP
Sbjct: 161 SSSPSSSSPSVPPSSPPSSPPSSSSSSLP 189
>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
Length = 406
Score = 35.1 bits (77), Expect = 0.055
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +3
Query: 225 YAASSTTAQSPGMPMNQPQ--PYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAA 398
Y AS + P + P PY P + S PAA+P + T+D S+F
Sbjct: 79 YPASYPASYPASYPASYPTSYPYPSPYPAPYPATYSAAPAAYPAAYVSSATTYDTSSFGG 138
Query: 399 TPIQPPPISTGVSVVTPVSL 458
+ PP S +S +P++L
Sbjct: 139 ASCEVPPCSPDMS--SPLTL 156
>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 35.1 bits (77), Expect = 0.055
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +3
Query: 285 YIPMMPNY-SQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPVS-- 455
Y PNY QS S+T + + N T ++F+ P PPIST +S TP+S
Sbjct: 843 YTSYSPNYWKQSSPSLTAYNSLSQSGN---TLGYNSFSP-PHVAPPISTPLSFTTPISSD 898
Query: 456 LPGMPSITVSATLPVSTIKKFTSNNHYTKSK 548
P P TV+ P S + N Y K+K
Sbjct: 899 SPPYPPSTVAVGYPPS-YPSYPEQNIYIKTK 928
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 34.3 bits (75), Expect = 0.096
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Frame = +3
Query: 252 SPGMPMNQPQPYI-PMMPNYSQSQASVTPAAFPTTAPNLVPTFDMS-NFAATPIQP--PP 419
+P +P+ P PYI P PN A P P +PT + + P P PP
Sbjct: 284 NPSIPLAPPNPYIPPAPPNLFIPSAPPNPHIPPAPPNPYIPTAPPNPSIPPAPPNPSIPP 343
Query: 420 ISTGVSVVTPVSLPGM--PSITVSATLPVSTIKKFTSNN 530
S+ P + P + P T +A +ST K F +N+
Sbjct: 344 APPNPSI--PPAPPNLFIPPATPNAFHTISTTKPFNTNS 380
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 33.9 bits (74), Expect = 0.13
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +3
Query: 246 AQSPGMPMNQPQPYIPMMP-NYSQSQASVTPAAFPTTAPNL-VPTFDMSNFAATPIQPPP 419
AQ P PQP P +Y S S PA P N +P + + A P PP
Sbjct: 869 AQQPAFQPPSPQPTQFYNPASYQPSAPSSMPAPVPLQPYNTPMPPISSTPYQAPPTLPPT 928
Query: 420 ISTGVSVVTPVSLPGM 467
T S PV +P M
Sbjct: 929 TLTTPSWSQPVPVPSM 944
Score = 27.9 bits (59), Expect = 8.4
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +3
Query: 228 AASSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTA-PNLVPTFDMSNFAATP 404
A SS A P P N P P I P Q+ ++ P T + VP M
Sbjct: 894 APSSMPAPVPLQPYNTPMPPISSTP--YQAPPTLPPTTLTTPSWSQPVPVPSMYQPQPPG 951
Query: 405 IQPPPISTGVSVVTPVSLPGMPSITVSATLPVS 503
I PP T + P++ P P ++ P S
Sbjct: 952 IMQPP--TSIPPSQPMAPPSFPPSSMGGFPPSS 982
>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
Length = 721
Score = 33.9 bits (74), Expect = 0.13
Identities = 25/77 (32%), Positives = 34/77 (44%)
Frame = +3
Query: 231 ASSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQ 410
ASS A P ++Q +P I + ++ A PA PT A + S P
Sbjct: 536 ASSPAAPQPEPTISQSEPTIRQSESAAKDTAPEAPAQPPTAADPV----SRSTTPTRPTS 591
Query: 411 PPPISTGVSVVTPVSLP 461
PPP ST +S + P S P
Sbjct: 592 PPPKSTSISSL-PDSAP 607
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 33.5 bits (73), Expect = 0.17
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Frame = +3
Query: 237 STTAQSPGMP--MNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQ 410
S A S G+P + +P P P ++ S TP P AP F S+ TP
Sbjct: 522 SVFAPSSGVPTPVTEPPP-APPPSVFAPSSGVPTPVTAPPPAPP-PSVFAPSSAVPTPAT 579
Query: 411 -PPPISTGVSVVTPVSLPGMPSITVSATLPVSTIKKFTSNNHYTKS 545
PPP++ +S P+ S SAT+ + T+ + T S
Sbjct: 580 APPPVAATLSAPPPLDSTSGSSTISSATICFGPTNRCTTTSSTTIS 625
>SB_53933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +3
Query: 285 YIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPV 452
YIPM+PN+ + PT P +P + TP+ PPP +T V +TP+
Sbjct: 85 YIPMIPNHITTLYPCKTKRLPTCTPVTMPF-----ISCTPVYPPPNAT-VLTLTPL 134
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 32.7 bits (71), Expect = 0.29
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Frame = +3
Query: 255 PGMPMNQPQP--YIPMMPNYSQSQASV--TPAAFPTTAPNLVPTFDMSNFAATPIQPPPI 422
P P P P Y P P+Y + S TP+++P A + PT N A P P
Sbjct: 181 PTQPFYPPTPSSYPPTQPSYPPTAPSYPPTPSSYPPIAASYPPTAPSYNPTAPSYPPTPS 240
Query: 423 STGVSVVTPVSLPGMPSITVSATLPVSTIKKFTSNNHYTKSKT 551
S P P P ++ T S +S+ + S T
Sbjct: 241 S--YPPTQPSHPPTAPFLSSDTTFLSSDTTFLSSDTIFLSSDT 281
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 276 PQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPT 374
PQPY P P+Y TP+++P T P+ PT
Sbjct: 533 PQPYPPTQPSYPP-----TPSSYPPTQPSYPPT 560
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 32.7 bits (71), Expect = 0.29
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 348 TTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPVSLPG--MPSITVSATLPVST 506
T +P + T N +TP PP+ST S PVS P P T S T PVST
Sbjct: 360 TPSPTMGKTLIQYNPVSTPSNTPPVST-PSHTPPVSTPSHTPPVSTPSHTPPVST 413
Score = 30.3 bits (65), Expect = 1.6
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Frame = +3
Query: 234 SSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFA---ATP 404
+ST + + G + Q P S S TP P + P+ P + +TP
Sbjct: 358 ASTPSPTMGKTLIQYNPVSTPSNTPPVSTPSHTP---PVSTPSHTPPVSTPSHTPPVSTP 414
Query: 405 IQPPPISTGVSVVTPVSLPG--MPSITVSATLPVST 506
PP+ST S PVS P P T S T PVST
Sbjct: 415 SHTPPVST-PSHTPPVSTPSNTPPVSTPSHTPPVST 449
>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 32.3 bits (70), Expect = 0.39
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
Frame = +3
Query: 234 SSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQP 413
+STT+ +P Y S + + TP+ PTT+ ++ + T
Sbjct: 27 TSTTSYTPTPSYTPTTSYTSTTSYTSTTSYTPTPSYTPTTSYTTTTSYTSTTSYTTTTSY 86
Query: 414 PPISTGVSVVTPVSLPGMPSIT-VSATLPVSTIKKFTSNNHYTKSKTY 554
P ++ S + S S T ++T ++ +TS YT + +Y
Sbjct: 87 TPTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSY 134
>SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)
Length = 213
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 423 STGVSVVTPVSLPGMPSITVSATLPVSTIKKFTSNNHYTKSKTYYHEKLLVY 578
S SV VS S++ S + VS + + SNNH TKS +Y+++ ++++
Sbjct: 58 SVSQSVSQSVSQSVSQSVSQSVSQSVSPVSQSVSNNHNTKS-SYHNDIIIIF 108
>SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +3
Query: 237 STTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTA-PNLVPTFDMSNFAATPIQP 413
+ T QS M N P + M PN + S A P PN P+F M+ P+
Sbjct: 313 ANTTQSLAMYPNTT-PSLAMYPNTTPSLAMYPNTTQPLAMYPNTTPSFAMNPNTTQPLAM 371
Query: 414 PPISTGVSVVTPVSLPGMPSITVSATLPVS 503
P +T + P + P + ++ + T P+S
Sbjct: 372 YPNTTQPLAMYPNTTPSL-AMNPNTTQPLS 400
>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
Length = 310
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +2
Query: 122 HPPLHSLWYLTWLHILVILQMQH*LNLEAYHQYLV-CSLQHHCPVSWYADESASAIHTN- 295
H L ++ L +L+ + + AY V ++ H C YA S + T
Sbjct: 215 HACLFMIYAFCSLFVLITIVHARLFMIYAYCSLFVFITIVHACLFMIYAYCSLFVLITII 274
Query: 296 DAKL*SVSGFCDSSCFPYNCTKSSTY 373
A+L + +C C YNC+++S Y
Sbjct: 275 HARLFMIYAYCSLFCLNYNCSRASVY 300
>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
Length = 1265
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Frame = +3
Query: 255 PGMPMNQPQPY--IPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFA---ATPIQ--- 410
P +P NQ PY P +YSQ Q P F + P V FA T +Q
Sbjct: 184 PFIPGNQQSPYGVSPGQVDYSQMQG---PIQFRSGQPGFVTPMAYPGFAHPGPTTMQQQM 240
Query: 411 --PPPISTGVSVVTPVSLPGMP 470
PPP S V P +PG P
Sbjct: 241 QYPPPPSLFVVRPAPTQMPGNP 262
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 1/106 (0%)
Frame = +3
Query: 240 TTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPP 419
TT+ +P Y P S + + TP+ PT + P++ + P
Sbjct: 83 TTSYTPTPSYTSTTSYTPTTSYTSTTSYTPTPSYTPTPSYTPTPSYTSTTSYTPTTSYTP 142
Query: 420 ISTGVSVVTPVSLPGMPSITVSATLP-VSTIKKFTSNNHYTKSKTY 554
+ S + S S T + P ++ +TS YT + +Y
Sbjct: 143 TPSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTSYTSTTSY 188
>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
Length = 406
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 297 MPNYSQSQASV-TPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPVSLPGMPS 473
+P S +AS TP A TT+ +P+ SN A+ P T +S + +SLP PS
Sbjct: 124 LPRTSSLKASSNTPTALSTTSLMSLPS--TSNLKASSNTP----TALSTTSLMSLPSTPS 177
Query: 474 ITVSATLPVS 503
+ S+ P +
Sbjct: 178 LEASSNTPTA 187
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/84 (26%), Positives = 28/84 (33%)
Frame = +3
Query: 309 SQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPVSLPGMPSITVSA 488
SQS + V P P P A P QP P+ V P + MP+ + A
Sbjct: 622 SQSMSQVNPRPLMQVQPTPQPVI----IAVQPQQPAPVPLAVQSQAPPASHSMPAQPLMA 677
Query: 489 TLPVSTIKKFTSNNHYTKSKTYYH 560
T T+ YYH
Sbjct: 678 TPMPQMQTMVTTPQQQQMQSGYYH 701
>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Frame = +3
Query: 225 YAASSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATP 404
Y+A T A + P P P Y + TP P+ ++ ATP
Sbjct: 582 YSAYETIAVN-ATPTISPSPNGTTSSLYETIDVNATPTISPSLNETTSSAYETIAVNATP 640
Query: 405 -IQPPPISTGVSVVTPVSLPGMPSITVS 485
I P P T SV + L P+I+ S
Sbjct: 641 TISPSPNGTTSSVYETIDLNATPTISPS 668
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +3
Query: 288 IPMMPNYSQSQASVTPAAFPTTAPNLVP-TFDMSNFAATPIQPPPISTGVSV-----VTP 449
+P+ P + + V+PAA P+T P P T + ++TP + G ++ P
Sbjct: 959 VPLTP---AATSPVSPAAAPSTTPGAAPSTTPGAESSSTPGAASSSTPGAALSRTPGAAP 1015
Query: 450 VSLPGMPSITVSATLPVST 506
S PG S T P ST
Sbjct: 1016 SSTPGAASSTTPGAAPSST 1034
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 435 SVVTPVSLPGMPSITVSATLPVSTIKKFTSNNHYTKSKTYYHEKLLVYL 581
++V +SLP P + + + K T + Y K K+ HE + +YL
Sbjct: 49 AIVRRLSLPSPPKLQILVDRAAHYVLKNTLESEYAKVKSGIHELVTMYL 97
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 237 STTAQSPGMPMNQPQPYIPMMPNYSQS-QASVTPAAFPTTAPNLVPTFDMSNFAATPIQP 413
ST+ S P P P+ P+ + S S P+ P++ P+ P+ + S+ ++ P
Sbjct: 466 STSPISNPSPRPHPSPHPSSNPSPNPSPNPSSDPSPNPSSNPSSDPSPNPSSNPSSEPSP 525
Query: 414 PPISTGVSVVTPVSLP 461
PIS +P+S P
Sbjct: 526 NPISNPSISTSPISNP 541
>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1047
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 261 MPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPI-QPPP--ISTG 431
MP N P P IP+ N+ P P PN +P +F +P +PPP I TG
Sbjct: 696 MPANAPPPNIPIQANF--------PRNIP--PPNYIPPTQQMSFQHSPYNRPPPNVIPTG 745
Query: 432 VSVV 443
V+
Sbjct: 746 NMVI 749
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 321 ASVTPAAFPTTAPNLVPTFDMS----NFAATPIQPPPISTGV-SVVTPVSLPGMPSITVS 485
+S+ ++ TT+ + P+F+ S + +TP + PIS+ V S T V M S +++
Sbjct: 939 SSMESSSMATTSTSSTPSFESSMTTNSTTSTPAEAVPISSSVSSTTTSVLTSSMESFSMA 998
Query: 486 ATLPVST 506
T +T
Sbjct: 999 TTSTTTT 1005
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 29.1 bits (62), Expect = 3.6
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +3
Query: 270 NQPQPY--IPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVV 443
+ PQ + +P +P Y ++ S + P TAP P+ A PPP+ G+ +
Sbjct: 286 SSPQVFRGLPQLPQYFEACHSSPSISRPATAP---PSISRPATA-----PPPVFRGLPQL 337
Query: 444 TPV--SLPGMPSITVS-ATLPVSTIKKFTSNNHY 536
PV LP +P + T P S K S+ Y
Sbjct: 338 PPVFRCLPQLPPVFPGLLTAPPSISKPANSSPQY 371
>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 345 PTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPVSLPGM 467
P T P+ PT S ++ PPP V P+ LP M
Sbjct: 305 PATPPSRAPTRSPSGCSSDSTNPPPSPRVSGAVPPLMLPTM 345
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 249 QSPGMPMNQPQPYIPMMPNYSQSQASVTP 335
Q P + Q Q +P P +Q QA TP
Sbjct: 942 QKPSQQLQQTQAQLPQQPQETQEQAQATP 970
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 285 YIPM-MPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPVSLP 461
++P +P +S Q P FP P+ M P++ PP+ PVS P
Sbjct: 456 HVPFPIPVHSPPQIEKVPIPFPYPVPSPPQIKPMPYPVPVPVRQPPMIQRFYYPVPVSRP 515
Query: 462 G 464
G
Sbjct: 516 G 516
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/59 (32%), Positives = 23/59 (38%)
Frame = +3
Query: 327 VTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPVSLPGMPSITVSATLPVS 503
VT TTAP PT TP PPP+ P+ P P T T+P +
Sbjct: 884 VTKNPKTTTAPPTTPTTPKPT---TPAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTT 939
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 PMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPI-QPPPISTGVSV 440
P P P Y + TP P+ ++ ATPI P P T SV
Sbjct: 591 PTISPSPNGTTSSVYETIAVNATPIISPSPNGTTSSVYETIAVNATPIISPSPNGTTSSV 650
Query: 441 VTPVSLPGMPSITVSATLPVST 506
+++ PSI++S S+
Sbjct: 651 YETIAVNATPSISLSTNETASS 672
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 300 PNYSQSQASVTPAA-------FPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPVSL 458
P YS+ AS P++ P T P PT + + PPP+ T +S+ TP++
Sbjct: 207 PRYSRILASPGPSSPASDSDNSPGTPPT-PPTVRLRKKESASRIPPPLLTTMSLDTPLAE 265
Query: 459 PGMPSIT--VSATLPVST 506
P P T SA P+S+
Sbjct: 266 PPAPPPTTPTSAGAPLSS 283
>SB_39622| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=5.3)
Length = 107
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 228 AASSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAP 359
AAS+ + +P Q Y P MP+Y +S P P P
Sbjct: 29 AASAMSHATPSYQQPQMPSYQPQMPSYQPQMSSYQPQMSPYQYP 72
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/67 (25%), Positives = 24/67 (35%)
Frame = +3
Query: 252 SPGMPMNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTG 431
+P N P+P P + + P+ T L P SN P PP S
Sbjct: 69 TPPHQSNTPRPLTPPSRQSNNPRPHTPPSCQSNTPRPLTPPPRQSNTTQPPAYPPRQSYA 128
Query: 432 VSVVTPV 452
+ TP+
Sbjct: 129 LQQTTPL 135
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 28.3 bits (60), Expect = 6.3
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Frame = +3
Query: 249 QSPGMPMNQPQPYIPMM--PNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATP--IQPP 416
Q PG Q +P +P+M P P P P +P +S P + PP
Sbjct: 328 QQPG----QQKPIMPLMQAPQVGPPGNMSMPNHRPQGLPPGMPPMALSLPGMPPPGLLPP 383
Query: 417 PISTGVSVVTPVSLPGMPSITVSATLPVSTIKKFTSNNHYTKSKTYY 557
P + + LPGMP + P+ +K+ + H T Y
Sbjct: 384 PGMPPRLPIPGLGLPGMPLPGMPGMPPMGMVKQSEWSEHRTSDGRVY 430
>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
Length = 312
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 270 NQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFA--ATPIQPPPISTGVSV 440
++P + P S + TP +PT PN PT D S+ ++ +QP I+ G +V
Sbjct: 91 SKPTEDVGTSPQPSTENETHTPTTYPTPPPN--PTDDTSSTVNMSSIVQPTGIANGGAV 147
>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1125
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 243 TAQSPGMPMNQPQPYIPMMPNYSQSQAS 326
T+ SP N P++ + P YSQ Q S
Sbjct: 188 TSSSPSSSSNTDSPFLEITPRYSQEQLS 215
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 375 FDMSNFAATPIQPPPISTGVSVVTPVSLPGMPSITVSATLP 497
+D S + P+ PI V P LPG P IT ++LP
Sbjct: 864 YDTSPLSRAPLGTSPIINTKPAVLP-GLPGTPPITSPSSLP 903
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/80 (26%), Positives = 32/80 (40%)
Frame = +3
Query: 285 YIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPVSLPG 464
YIP P+ + + TP TTAP + TP P++T TP +
Sbjct: 150 YIPPPPSPPTTTTTTTPE---TTAPRTTTPETTTPETTTPRTTTPVTTTPRTTTPETTTP 206
Query: 465 MPSITVSATLPVSTIKKFTS 524
+ + T +T KK T+
Sbjct: 207 ETTTPRTTTPETTTPKKTTA 226
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/88 (20%), Positives = 31/88 (35%)
Frame = +3
Query: 267 MNQPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVT 446
M + + P + S + P+ + P + PT +N + + I P P
Sbjct: 672 MASRESLVKSSPPGNSSSPGIPPSGPANSFPPVTPTSLTANSSPSGIPPSPPDNAFMSKI 731
Query: 447 PVSLPGMPSITVSATLPVSTIKKFTSNN 530
PV+ P + V + T NN
Sbjct: 732 PVNTAEGPGLVAGEVGQVGSFTVLTDNN 759
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 414 PPISTGVSVVTPVSLPGMPSI-TVSATLPVSTIKKFTS 524
PP+++G + TP+S P I T + P +T K T+
Sbjct: 875 PPMTSGPTTTTPISTSAAPEITTANPGSPSTTTKSVTT 912
>SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)
Length = 584
Score = 27.9 bits (59), Expect = 8.4
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Frame = +3
Query: 228 AASSTTAQSPGMP--MNQPQPYIPMMPNYSQ-----SQASVTPA-AFPT-TAPNLVPTFD 380
A ++ +Q P P M+ P + P SQ S A+ PA + P+ +P L+ +
Sbjct: 251 ATAAPISQLPSQPVHMSSINPVLSSKPEPSQPTPPSSIATSQPAVSVPSGMSPALIGSLG 310
Query: 381 MSNFAATPIQPPPISTGVSVVTPVSLPGMPSITVSATLPVSTI 509
+ +TP+ PP +S S P+SL S+ S T PVS++
Sbjct: 311 TTP-GSTPLPPPLLSNSTSSKPPMSL--AESLAAS-TQPVSSL 349
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 27.9 bits (59), Expect = 8.4
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = +3
Query: 267 MNQPQPYIPMMPNYSQSQASVTPAAFPTT---APNLVPTFDMSNFAATPIQPPPISTGVS 437
M +P P + Q AS TP PTT A P + A + P P++
Sbjct: 2285 MKEPSPLAAIRAGERQPFASSTPVRPPTTTSVAMGAGPPPSATGQALPVMSPAPVAMPTG 2344
Query: 438 VVTPVSLPGMPSITVSATLPVSTIKKFTS 524
++P+ P + S S +P+ T TS
Sbjct: 2345 GLSPIVSPAVRS---SIPVPLVTQSTATS 2370
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 207 HTISI*YAASSTTAQSPGMPMNQPQPYIPMMPNYSQSQASVTPAAFP-TTAPNLVPTFDM 383
H ++ ++A T S +P Q P P N + Q + P TTAP +
Sbjct: 148 HNNALQHSAPITQLPSTQLPSTQA-PINPTPINSNSHQLQLLSTLIPSTTAPINPAAINP 206
Query: 384 SNFAATPIQPPPIS 425
+ TPI P PI+
Sbjct: 207 TPINPTPINPTPIN 220
>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 1242
Score = 27.9 bits (59), Expect = 8.4
Identities = 24/97 (24%), Positives = 38/97 (39%)
Frame = +3
Query: 273 QPQPYIPMMPNYSQSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPV 452
+P+ +P++P++ S + P + D N + Q V+ + P
Sbjct: 323 RPKATLPLVPSHQTYSGSGLTSPNAINGPQITSPNDY-NESVVHQQHAANGRAVTSLHPY 381
Query: 453 SLPGMPSITVSATLPVSTIKKFTSNNHYTKSKTYYHE 563
S PG P LP S + NNH + T YHE
Sbjct: 382 SGPGAP-------LPHSETAVASLNNHNRSTVTPYHE 411
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,891,311
Number of Sequences: 59808
Number of extensions: 469062
Number of successful extensions: 1751
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -