Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20139
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.23 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.5  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 333 PAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPVSLPGMPS 473
           P +  ++  + +P  ++S   A   QPPP + GVS V+PVS+  + S
Sbjct: 356 PKSSESSTGSSIPKLNLST--ALMSQPPP-NFGVSQVSPVSMSALVS 399


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 498 VSTIKKFTSNNHYTKSKTYYH 560
           +S I  + +NN+Y K K YY+
Sbjct: 90  ISNISNYNNNNNYNK-KLYYN 109


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 498 VSTIKKFTSNNHYTKSKTYYH 560
           +S I  + +NN+Y K K YY+
Sbjct: 328 ISNISNYNNNNNYNK-KLYYN 347


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 312 QSQASVTPAAFPTTAPNLVPTFDMSNFAATPIQPPPISTGVSVVTPVSLPGMPSITVSAT 491
           +S+A  T A+ P T         ++   AT   P   +TG    TP ++    + T + T
Sbjct: 205 ESKAGSTDASTPAT---------VTTTGATTTLPAASATGTGPATPSAVVATSNATAAMT 255

Query: 492 LPVSTI 509
              +TI
Sbjct: 256 TGTTTI 261



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 291 PMMPNYSQSQASVTPAAFPTTAPNLVP 371
           PM        ASV  AA   T P L+P
Sbjct: 459 PMSVQVDPMAASVVAAALTGTYPTLLP 485


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 137 SLWYLTWLHILVI 175
           SLW++ W   LVI
Sbjct: 285 SLWFMAWTPYLVI 297


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 137 SLWYLTWLHILVI 175
           SLW++ W   LVI
Sbjct: 35  SLWFMAWTPYLVI 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,377
Number of Sequences: 438
Number of extensions: 4547
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)