Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20138
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    29   0.80 
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    27   3.2  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   7.4  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.4  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   7.4  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -3

Query: 409 TGLKYIQNNPTLLKSVLLIQIDKTRRIFTI*ISFNK*F*LAQVKFSH 269
           T L+Y+Q  P    ++  +++DK+ +   + +SF K F LA + F H
Sbjct: 237 TALRYLQKYPEPRAAIRAMRLDKSLK---VPVSFEKEFALADLAFRH 280


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 95  LQDVIKSLLEKVFKGF 142
           L+D IK +LEKVF GF
Sbjct: 69  LEDQIKKVLEKVFSGF 84


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -3

Query: 517  SIINTKFSPXXXXXXXXXXYVFIANNYSMHCDIFNDTGLKYIQNNPTLLKSVLLIQIDKT 338
            SII  +FS            +     Y++HCD+  D  L  I N+  +L   L+ +  KT
Sbjct: 961  SIIKNEFSNVMPIRGARIPIIKFTGQYNIHCDLSFD-NLLPIHNSDLILNYSLIDERVKT 1019


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 104 HLAMILATCLIIGIFNMTNKKNLA 33
           H    LATC++IG+F++   +N A
Sbjct: 754 HHFFSLATCVLIGVFDLPELQNEA 777


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 423 SQCIE*LFAINT*YIISKYISYNGLNFVFIIDSVSSHWSKFEQ 551
           S C   +  +NT   ISKY +Y G++   +I     + +K  Q
Sbjct: 63  SHCQNEIICLNTHRTISKYEAYGGIHPTIVIHEHQKNLAKVIQ 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,054
Number of Sequences: 5004
Number of extensions: 47881
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)