Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20138
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0140 - 18358997-18359082,18359255-18359318,18359469-183595...    28   7.7  

>05_04_0140 -
           18358997-18359082,18359255-18359318,18359469-18359583,
           18360101-18360216,18360420-18360541,18360628-18360757,
           18361328-18361420
          Length = 241

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 200 NVYLIFKIVYILKHVLYYINHFNMTKFNLCKLESF 304
           NVYL+F ++ +   + Y  N   +  FNL + E F
Sbjct: 157 NVYLVFLVLVLFSCLTYVHNANGIESFNLSRQEHF 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,559
Number of Sequences: 37544
Number of extensions: 223591
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)