Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20137
         (641 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    45   0.001
UniRef50_O31530 Cluster: YetA protein; n=3; Bacillus|Rep: YetA p...    34   3.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = -2

Query: 217 FLLLR*VDELTAHLVLGGYWSP 152
           FLLLR VDELTAHLVL GYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_O31530 Cluster: YetA protein; n=3; Bacillus|Rep: YetA
           protein - Bacillus subtilis
          Length = 857

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 11/39 (28%), Positives = 27/39 (69%)
 Frame = +3

Query: 180 WAVSSSTHLSNKKKQPQLDRDFVCYEQEIKKKRRFRFYY 296
           W++  ++H   K+ + QLD  F+ Y++E++++R + F++
Sbjct: 461 WSIIDTSHPLKKELEEQLDAAFLFYKKEVEQRRWYGFWH 499


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,607,823
Number of Sequences: 1657284
Number of extensions: 8382636
Number of successful extensions: 14945
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14941
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)