Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20137
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    28   1.3  
SPBP8B7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.0  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   7.0  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.3  

>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 168 PNTRWAVSSSTHLSNKKKQPQLDRDFVCYEQEIKKKRRFRF 290
           P+   + S+S     ++K+ Q D +   +EQ    KR+FRF
Sbjct: 348 PSELQSYSASHEYDKRRKREQRDANSHAFEQTANGKRQFRF 388


>SPBP8B7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 102

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 250 AMSRK*KKSVDLDSIILFNSTG 315
           AM R+ +K +D+D  IL+ +TG
Sbjct: 26  AMIRRMRKKLDIDGSILYQATG 47


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 197 GRAHSPPSVRWLLEPIDIYN 138
           G  H P +V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 191 AHSPPSVRWLLEPIDIYNVNAPPTLR 114
           A  PPS++    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,769
Number of Sequences: 5004
Number of extensions: 38336
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)