Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20137
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832...    29   3.1  
07_03_1050 - 23570785-23570824,23570938-23571004,23571114-235711...    29   4.1  

>06_02_0066 -
           11081446-11081544,11081639-11081846,11083122-11083257,
           11083339-11083541,11083616-11083765,11083848-11083964,
           11084623-11085119
          Length = 469

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 290 ESKSTLFFYFLLIADEVTIQLRLFFFIA*MSGRAHSPPSVRWLLEPIDIYNVNAPPTLRY 111
           E K+   FY  LI+D V + L + FFIA           +R L E    + +     +RY
Sbjct: 175 EKKAVYTFYLELISDLVHLSLYMLFFIAIFLNYGVPLHLIRELYETFRNFRIRIADYVRY 234

Query: 110 K 108
           +
Sbjct: 235 R 235


>07_03_1050 -
           23570785-23570824,23570938-23571004,23571114-23571196,
           23572028-23572201,23572268-23572471,23572570-23573300
          Length = 432

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 273 FFLFPAHSRRSHDPVEAVFFYCLD 202
           +  FP HS+ + D VE  F YCL+
Sbjct: 284 YMTFPVHSKFTDDDVENYFKYCLN 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,409,824
Number of Sequences: 37544
Number of extensions: 209132
Number of successful extensions: 334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)