Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20137
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45075| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_2743| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.80 
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.2  
SB_41009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_45075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 261 PAHSRRSHDPVEAVFFYCLDEWTSSQPT 178
           P H+  SH  +EA+ F CLD  T  +PT
Sbjct: 29  PGHAVGSHAVIEALLFICLDSVTVVRPT 56


>SB_2743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 261 PAHSRRSHDPVEAVFFYCLDEWTSSQPT 178
           P H+  SH  +EA+ F CLD  T  +PT
Sbjct: 29  PGHAVGSHAVIEALLFICLDSVTVVRPT 56


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 260 LLIADEVTIQLRLFFFIA*MSGRAHSPPSVRWLLEPIDIYNVNAPPT 120
           L++  E+  +    FFI  MS  + +PP        ID+ +VN PPT
Sbjct: 239 LVVVREMDFETHPQFFIQVMSTDSGTPPLSHVQNFTIDVMDVNEPPT 285


>SB_41009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 78  PTH*DLRALELISQGGWRVYVVDIYGLQ*PPNTRWAVS 191
           P   +++ LE I +G W+ YV  +      P T W V+
Sbjct: 289 PNQENIQLLEKIDKGCWKAYVSTLVNHFQTPGTGWCVT 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,767,183
Number of Sequences: 59808
Number of extensions: 253601
Number of successful extensions: 403
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)