Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20136
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q89NG0 Cluster: Blr3880 protein; n=2; Bradyrhizobium ja...    35   1.6  
UniRef50_Q6U1N4 Cluster: NADH dehydrogenase subunit 2; n=2; Biom...    34   3.8  
UniRef50_Q4Y447 Cluster: Putative uncharacterized protein; n=2; ...    33   8.8  

>UniRef50_Q89NG0 Cluster: Blr3880 protein; n=2; Bradyrhizobium
           japonicum|Rep: Blr3880 protein - Bradyrhizobium
           japonicum
          Length = 465

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = -2

Query: 360 TFFDHCIVDYHSRHIASE*KPA*FTLCCVLCLNYGCIHHFGPYK*LYGTYLYIAVLRVDN 181
           TFFD   VD   +HI +E   A F    ++ +  G I  FGPY+ +   +  + +  + +
Sbjct: 9   TFFD--FVDDPWKHIGNEQAAARFHQDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKD 66

Query: 180 PYKYPNLTPNRVNLPRT--LGKLGRPL 106
               P      ++LP+T  LG  G  L
Sbjct: 67  RIIVPGFIDGHIHLPQTRVLGAYGEQL 93


>UniRef50_Q6U1N4 Cluster: NADH dehydrogenase subunit 2; n=2;
           Biomphalaria glabrata|Rep: NADH dehydrogenase subunit 2
           - Biomphalaria glabrata (Bloodfluke planorb)
          Length = 302

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = -1

Query: 496 ELIEFSYFA*KEFLLFFVIIGSNQIKLFFYLIHLISYSC*NITCTYFF*SLYC*LSFTSH 317
           +++ +S F+  E+++FFV+I S+ I L FYL    SY   N   + F  S++C L+    
Sbjct: 239 KILLYSLFS-LEYIVFFVLILSSVISLNFYLKFFYSYFLTNKWNSKFLLSIFCLLNLLGI 297

Query: 316 RF 311
            F
Sbjct: 298 AF 299


>UniRef50_Q4Y447 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 603

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = -1

Query: 673 KKLKVKRTQTNQNFCYFRIYSR-IES*FC*HSQRTHTNKNKPQILNVTLIKNPR---YPL 506
           K  K ++    Q  CY+ I+ + I +    HS   +    +  ILN  +IKN     Y  
Sbjct: 456 KNKKYRQNIITQTKCYYSIFFKSIINLIYEHSLHIYRMLKRYSILNNVVIKNAEKNNYKF 515

Query: 505 *VSELIEFSYFA*KEFLLFFVIIGSNQIKLFFYL 404
              +   F Y   ++  +FF I+  N   LF+ L
Sbjct: 516 DFKKSFPFVYKIYRDIYIFFKIMKKNNFTLFYVL 549


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,672,478
Number of Sequences: 1657284
Number of extensions: 10741076
Number of successful extensions: 18132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18123
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)