Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20136
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost ...    29   3.9  
At1g52760.1 68414.m05964 esterase/lipase/thioesterase family pro...    27   8.9  

>At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost
           identical to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana], missing 200 aa at
           N-terminus
          Length = 772

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 168 PNLTPNRVNLPRTLGKLGRPLFY 100
           PNLT ++V + RT+  +GRP  Y
Sbjct: 683 PNLTSSKVTVSRTVKNVGRPSMY 705


>At1g52760.1 68414.m05964 esterase/lipase/thioesterase family
           protein low similarity to monoglyceride lipase from
           [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162;
           contains Interpro entry IPR000379
          Length = 332

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 328 FTSHRFGIETSLIYTMLCIVLKLWMYSSF 242
           + SH +G +TS ++  +C+    W Y+ F
Sbjct: 68  YMSHGYGSDTSWMFQKICMSFSSWGYAVF 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,283,951
Number of Sequences: 28952
Number of extensions: 232724
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)