Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20135
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    25   0.73 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   9.0  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 236 HTYFRRNNIKLMYKRDGLALTLRDDSNNDGRLAYGDGKDKTSPKV 370
           H+ F    IKL+ +++       D++  + +   G+ KDK  PK+
Sbjct: 203 HSQFIGYPIKLVVEKEREKELSDDEAEEEKKEEEGEDKDKDKPKI 247


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +3

Query: 222 FPVEFTLIFAETTL 263
           FP++++L+F+ET L
Sbjct: 701 FPIDYSLVFSETKL 714



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 222  FPVEFTLIFAETTLS 266
            FP+++TL+F++ T S
Sbjct: 1079 FPIDYTLVFSKFTSS 1093


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 82  ANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTSSGC 192
           +NR TR    + +    T +   TR T  +TP SS C
Sbjct: 266 SNRFTRHLIQRRTHTRHTTTSHNTRGTPRTTPASSRC 302


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 574 YNRESTRRWCSLSQP 618
           +  E  R WCS SQP
Sbjct: 227 FTLEQHRSWCSSSQP 241


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 659 RGHCIRTPCG 630
           R +CI+ PCG
Sbjct: 335 RSYCIQPPCG 344


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,352
Number of Sequences: 336
Number of extensions: 2506
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)