Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20135
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    30   0.34 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    28   1.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.5  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   5.5  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    25   9.7  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    25   9.7  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 75  EKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWMQGSKD 206
           +K   I + +KS + ++   K+++ NK+N +E A Q W +  K+
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 9   SDSKLEDDLYNSILVADYDNAVEKSKQIYED--KKSEVITNVVNKLIRNNKMNCMEYAYQ 182
           ++ KL   L N+I++         SK++ E   KKS+ + N VNK ++ N  N      Q
Sbjct: 139 NNGKLRTLLQNAIVLLGQQTTNVASKKLNEQDGKKSDNLRNGVNK-VKQNMRNGASARDQ 197

Query: 183 LWMQGSK 203
              QGSK
Sbjct: 198 AREQGSK 204


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 21   LEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNN 152
            LE+D  +  ++   + A+  SK I  D+  E+I +  NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 102 KKSEVITNVVNKLIRNNKMNCMEYAYQLWMQ 194
           K+   +T+  NKL+ ++  +  +YAY L +Q
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +2

Query: 140 HTKQQDELHGVRLPALD-ARL-----QGYRPGVLPC*VHTYFRRNNIKLMYKR 280
           +TK  +EL  + L A++ ARL     Q    GVL     TYF R NI L + R
Sbjct: 131 NTKDMEELKALILYAMENARLFLDSEQNAAKGVLGLVDLTYFSRKNIDLDFAR 183


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 89  DLR-GQEERSHHKCRKQTHTKQQDEL 163
           D+R GQEE       +  HT QQDEL
Sbjct: 7   DIRNGQEEDDLFSENEDNHTSQQDEL 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,627
Number of Sequences: 5004
Number of extensions: 42200
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)