Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20135
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0345 - 29417029-29417769 31 1.1
12_01_0825 - 7611594-7611728,7612061-7612276,7612505-7612589,761... 30 1.4
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990... 30 1.4
08_02_1497 - 27548328-27548534,27548876-27548978,27549074-275491... 30 1.4
02_02_0572 + 11667455-11670783,11672026-11672419 29 3.3
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953... 29 3.3
04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774... 29 4.3
11_06_0232 + 21559467-21559532,21559586-21560200 28 5.7
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799... 28 5.7
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317... 28 7.6
>05_07_0345 - 29417029-29417769
Length = 246
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 517 KAQWTLQPAKYDNDVLFFMYNRESTRRWCSLSQPTPGVPHGVRIQW 654
+AQ+ LQP K+ N + + + RR+ + +P P+G + W
Sbjct: 121 RAQYGLQPLKWSNKLARYARRWSAARRFDCVMMHSPESPYGENVFW 166
>12_01_0825 -
7611594-7611728,7612061-7612276,7612505-7612589,
7613170-7613372,7613935-7615723,7616322-7616450,
7616825-7616928,7618725-7618779,7618860-7618975
Length = 943
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 496 GQQRQGFKAQWTLQPAKYDNDVLFFMYNRESTRRWCSLSQPTPG 627
G R+ K WT P + D D++ M N+ ++W +++Q PG
Sbjct: 43 GPTRRSTKGNWT--PEEED-DIIVQMVNKLGPKKWSTIAQALPG 83
>09_06_0106 -
20898480-20898680,20898762-20898864,20898953-20899047,
20899113-20899135,20899725-20899799,20900219-20900267,
20900349-20900414,20901257-20901306,20901688-20901812,
20903488-20903600
Length = 299
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 502 QRQGFKAQWTLQPAKYDNDVLFFMYNRES 588
+R GF WT +P K+DN + ES
Sbjct: 178 ERSGFDGAWTKEPLKFDNSYFLELLREES 206
>08_02_1497 -
27548328-27548534,27548876-27548978,27549074-27549153,
27549245-27549327,27549899-27549947,27550028-27550093,
27550254-27550303,27550762-27550886,27551842-27551954
Length = 291
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 502 QRQGFKAQWTLQPAKYDNDVLFFMYNRES 588
+R GF+ WT +P K+DN + ES
Sbjct: 168 ERSGFEGAWTQEPLKFDNSYFLELLKGES 196
>02_02_0572 + 11667455-11670783,11672026-11672419
Length = 1240
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = -1
Query: 409 DLVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTV-ALVHQLNVVSAKISVN 233
+L++LP + LP++ +++ GK +VVA S T+ + + ++ AKI+V
Sbjct: 828 ELIILPVYSALPSEMQSKIFDPAPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKINVY 887
Query: 232 STGKHSRTISLEPCIQS 182
++ + ++ + P Q+
Sbjct: 888 NSKQGLDSLVITPISQA 904
>02_02_0535 -
11292509-11294679,11294971-11295040,11295268-11295324,
11298629-11298789,11299123-11299156
Length = 830
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 431 QRNQYLTLSVKTTPTQNHMAYGVNS 505
QR Q L+ S +T P NH ++G N+
Sbjct: 790 QRKQLLSFSQRTVPVNNHSSHGSNN 814
>04_04_1568 -
34475707-34476822,34476894-34477083,34477330-34477464,
34477571-34477668,34477789-34477979,34478784-34479286,
34480169-34481568,34481655-34481855
Length = 1277
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 564 VLHVQPRINEALVLSKPTDTWG 629
VL+ P +NEA V+++P + WG
Sbjct: 459 VLYGHPAVNEAAVVARPDEFWG 480
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 10 PTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYET 150
P P ++T ASS P T P + +R R RRA+++Q +S T
Sbjct: 142 PRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186
>04_04_1020 +
30179214-30179285,30179597-30179671,30179839-30179947,
30180425-30180642,30180729-30181309,30181387-30182185
Length = 617
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 365 KVSWKFVPLWENNKVYFKIVNTQRNQYLTLSVKTTPTQNHMAYGVNSV 508
K+ + +P+W + VYF I NTQ T + T T +A G SV
Sbjct: 383 KILLRLIPIWLTSAVYF-IANTQAQ--TTFVQQGTKTDGRIARGAFSV 427
>12_02_0847 +
23630937-23631099,23631200-23631396,23631604-23631738,
23631904-23632077,23632195-23632407,23632507-23632751,
23632890-23632930,23633200-23633238,23633552-23633565
Length = 406
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 63 DNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLW--MQGSKDIVREC 221
D +++ K+ Y + + + N + ++ N + AY+LW G K +REC
Sbjct: 301 DEKLQELKRDYGEGAHKAVMNALMEMKEYNVLADRSIAYELWNYKDGRKATLREC 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,677,335
Number of Sequences: 37544
Number of extensions: 290754
Number of successful extensions: 953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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