Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20135
         (661 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    26   0.21 
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    26   0.21 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   1.6  
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    23   6.5  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    23   6.5  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   6.5  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   8.5  

>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 283

 Score = 25.8 bits (54), Expect(2) = 0.21
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 274 QARRSCFDVAR*QQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHSA*SV 444
           Q  + C    R +    QT LRR Q QDE ++  E    V  +     DC+ S  S+
Sbjct: 66  QCEKCCLTAERQRVMALQTALRRAQTQDEQRALNE--GEVPPEPPRSFDCDSSTGSM 120



 Score = 21.0 bits (42), Expect(2) = 0.21
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 475 PKPHGLRGQQRQGFKAQWTLQPAKYDNDVLFFMY 576
           P+P  L        +AQW L+   Y  +++  MY
Sbjct: 159 PEPVNLLPDDELVKRAQWLLEKLGYPWEMMPLMY 192


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 25.8 bits (54), Expect(2) = 0.21
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 274 QARRSCFDVAR*QQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHSA*SV 444
           Q  + C    R +    QT LRR Q QDE ++  E    V  +     DC+ S  S+
Sbjct: 66  QCEKCCLTAERQRVMALQTALRRAQTQDEQRALNE--GEVPPEPPRSFDCDSSTGSM 120



 Score = 21.0 bits (42), Expect(2) = 0.21
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 475 PKPHGLRGQQRQGFKAQWTLQPAKYDNDVLFFMY 576
           P+P  L        +AQW L+   Y  +++  MY
Sbjct: 159 PEPVNLLPDDELVKRAQWLLEKLGYPWEMMPLMY 192


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 257 NIKLMYKRDGLALTLRDDSNNDGRLAYGDGKDKTSPKVSWKFVP 388
           N+K+  K+  +    R ++ ND  +  G  K   S K+ W   P
Sbjct: 680 NVKIETKKIDIKAAPRIEAKNDAYIPKGGDKKIISTKLQWNAKP 723


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 283 RSCFDVAR*QQQRWQTCLRRWQGQDESKS 369
           + C    R +    QT LRR Q QDE ++
Sbjct: 69  KCCLTAERQRVMALQTALRRAQTQDEQRA 97


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 283 RSCFDVAR*QQQRWQTCLRRWQGQDESKS 369
           + C    R +    QT LRR Q QDE ++
Sbjct: 69  KCCLTAERQRVMALQTALRRAQTQDEQRA 97


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 614 WLREHQRLVDSRLY 573
           WLREH+ L   ++Y
Sbjct: 432 WLREHKHLFQGKIY 445


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 14/48 (29%)
 Frame = +2

Query: 101 QEERSHHKCRKQTHT----KQQDE----------LHGVRLPALDARLQ 202
           +EE+ H +C KQ+ T    KQ ++          ++G  +PAL AR++
Sbjct: 483 REEKHHERCAKQSETTRIEKQLEQFESAPRSKLAVYGTNMPALVARIR 530


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,405
Number of Sequences: 2352
Number of extensions: 10159
Number of successful extensions: 40
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)