Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20135
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41026-4|AAA82351.2|  265|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation...    29   3.9  
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini...    29   3.9  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related...    28   6.8  
AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related...    28   6.8  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    27   8.9  

>U41026-4|AAA82351.2|  265|Caenorhabditis elegans Hypothetical
           protein C28G1.2 protein.
          Length = 265

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
 Frame = +2

Query: 215 GVLPC*VHTYFRRNNIKLMYKRDGLALTLRDDSNNDGRLAYGDG-KDKTSPKVSWKFVPL 391
           G L   V +Y + +   +  + D     +R +S N  R+ +  G ++K   K SW F P 
Sbjct: 58  GFLDSEVRSYLKNDLTDISVRADSGINDVRRNSPNQTRILFNAGWEEKLHEKRSWLFYPS 117

Query: 392 WENNKVYFKIVNTQRNQYLTLSVKTTPTQNHMAYGVNSVK--VLRPNGP 532
             N+KV   ++   + +++ L+V        + Y   S++  VL P+ P
Sbjct: 118 KYNSKVITYLI---KEKHVLLNVDDAFQMISIMYENKSLQFVVLVPSKP 163


>Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical
           protein F58A4.1 protein.
          Length = 254

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/59 (38%), Positives = 28/59 (47%)
 Frame = +1

Query: 10  PTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTSS 186
           P   + T   T SS   +T      + ST T R+ S+    T S  TT  TA STPTSS
Sbjct: 83  PYEETDTPIPTHSSPSTSTSTSTSTSTSTSTSRSTSTVTPTTRSSTTT--TATSTPTSS 139


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +1

Query: 13  TPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTSSGC 192
           T  + T  TT ++ P TT P      +T T  AK+++ + T + +TT+ T+  T T++  
Sbjct: 262 TTQTTTKPTTTTTTPTTT-PTTTTTPTTTTTTAKTTKST-TTTTKTTKTTSTPTTTTTTP 319

Query: 193 KAP 201
           K P
Sbjct: 320 KTP 322


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 505 RQGFKAQWTLQPAKYDNDVLFFMYNRESTRRWCSLSQPTPGVPHGVRIQWPR 660
           R+ F     L+ A YDN     +   E   + C       G+PH VR +W R
Sbjct: 518 RRMFMQGADLKTADYDNRTALHVAAAEGRIKVCKFLINIVGIPHDVRDRWGR 569


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +1

Query: 13  TPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTSSGC 192
           T  + TI T+ +++  TT+   KA  +T+T  + ++    T + +TT+    ++PTS+  
Sbjct: 215 TTKAATIKTSTTTVTPTTVTTTKAPTTTKTSTSTTTPKFTTTTIQTTK-KITTSPTSTTA 273

Query: 193 KAP 201
             P
Sbjct: 274 SIP 276


>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
           germline protein5 protein.
          Length = 1200

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 409 DLVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTV 281
           +L++LP    LP++  TR+      GK  +V+A      S T+
Sbjct: 781 ELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTI 823


>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
           protein MOG-5 protein.
          Length = 1200

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 409 DLVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTV 281
           +L++LP    LP++  TR+      GK  +V+A      S T+
Sbjct: 781 ELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTI 823


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   PQXPTPNSKTIFTTAS-SLPITTMPLKKANRSTRTR 105
           PQ P P  +T  T    +LP TT+P+   N++ RT+
Sbjct: 762 PQVPLPVVQTTQTAPKPTLPPTTLPVLTTNKTPRTK 797


>AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related
           helicase protein.
          Length = 1037

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 63  DNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCME 170
           +NA E SKQ+Y D K+ +++N  ++ +  + M  ++
Sbjct: 51  ENAQEFSKQLYHDLKNSILSNADDERLYKDIMTYLQ 86


>AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related
           helicase protein 1 protein.
          Length = 1037

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 63  DNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCME 170
           +NA E SKQ+Y D K+ +++N  ++ +  + M  ++
Sbjct: 51  ENAQEFSKQLYHDLKNSILSNADDERLYKDIMTYLQ 86


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 90  IYEDKKS-EVITNVVNKLIRNNKMNCMEYAYQLWMQGSKDIVRECF 224
           + +DK    ++  V+++L  N K+ C ++  QL       IVR C+
Sbjct: 248 VCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCY 293


>Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical
           protein T25B9.4 protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 10  PTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTPTSSG 189
           P P + T+    S  PIT     K +R +  +R K      ++   TT  T  S P + G
Sbjct: 434 PPPETATVALPNSLPPITVSARSKNSRKSTLKRKKKKTSKDSSMTTTTTNTNESEPPADG 493


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 90  IYEDKKS-EVITNVVNKLIRNNKMNCMEYAYQLWMQGSKDIVRECF 224
           + +DK    ++  V+++L  N K+ C ++  QL       IVR C+
Sbjct: 248 VCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCY 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,276
Number of Sequences: 27780
Number of extensions: 245061
Number of successful extensions: 852
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)