Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20132
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    31   0.12 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    30   0.38 
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    28   1.2  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   4.7  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    26   6.1  

>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = +3

Query: 285 TSRN--IFLEALPHARSEACARFIKYLVIEEKDKIEDAALLSLIRKLPFNVATFDQSLLE 458
           TSR+  + ++ LP+   EA   F  YLV+   D +ED   L L +KLP  +  F +++  
Sbjct: 45  TSRSFAVVIKELPNGIREAVMIF--YLVLRGLDTVEDDMTLPLDKKLPI-LRDFYKTIEV 101

Query: 459 ELEAFTKLGPD 491
           E   F + GP+
Sbjct: 102 EGWTFNESGPN 112


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 679  IAYVAQTLEPHHPVQVLRAIXIHSEIFHDYIVNVVLFDK 563
            I+ V Q LEP HP ++ + I IH E+  D + ++V F++
Sbjct: 2380 ISSVGQ-LEPWHPTELDQKIRIHPEVKVDSLTSLVTFNE 2417


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 649 HHPVQVLRAIXIHSEIFHDYIVNVVLFDK*KFNCLM 542
           ++  Q   A+ IH E   DY+  + LF K K N LM
Sbjct: 7   YNVTQSYAAVAIHKEQTADYVEAIALFQKAKRNILM 42


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 387  DAALLSLIRKLPFNVATFDQSLLEELEAFTKLGPDFTAEIR 509
            D+ LLS+ +KLP NV    +      E    LGP F   I+
Sbjct: 1146 DSVLLSMAKKLPRNVKELKEIHGVSNEKAVNLGPKFLQVIQ 1186


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 189 LYRVVEHYSPAELHDHH*AVRRLVLGTSYDMETSRNIFLEALPHARSEACARF-IKYLVI 365
           L R V  Y+      H+   R+ ++  ++   TSRN+F      A  +    F  + + +
Sbjct: 93  LVRNVVRYAICSQTSHNTITRKDIVQKAFPEGTSRNLFQSVFEEADRQLQLSFGFRLVAV 152

Query: 366 EEKDKIEDAALLSLIRKLPFN 428
            + ++ +D A+  L R    N
Sbjct: 153 TQSNRKKDMAVSQLRRPATSN 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,800
Number of Sequences: 5004
Number of extensions: 62549
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)