Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20132
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 33 0.30
08_02_1203 + 25262875-25263492,25264761-25264813,25265308-252653... 31 0.69
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 29 4.8
09_04_0290 - 16429495-16429559,16430040-16430316,16430410-164305... 28 6.4
03_01_0269 + 2080338-2080508,2081086-2081335,2081432-2082648,208... 28 6.4
02_03_0040 + 14262137-14262182,14262456-14262738,14262824-142629... 28 6.4
06_03_1367 + 29607008-29607501,29608726-29608906,29609006-296090... 28 8.5
06_01_0188 - 1464961-1466814 28 8.5
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 32.7 bits (71), Expect = 0.30
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +3
Query: 216 PAELHDHH*AVRRLVLGTSYDMETSRNIFLEALPHARSEACARFIKYLVIEEKDKIEDAA 395
P E H++ V RL+ + + +++ +FL L S+A + ++YL + + D I+D A
Sbjct: 351 PVEKHEYQAEVNRLMDLIVHSLYSNKEVFLRELVSNASDALDK-LRYLSVTDPDLIKDGA 409
Query: 396 LLSL 407
L +
Sbjct: 410 GLDI 413
>08_02_1203 +
25262875-25263492,25264761-25264813,25265308-25265373,
25265581-25265695,25265860-25265970
Length = 320
Score = 31.5 bits (68), Expect = 0.69
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +2
Query: 281 GDIQEYLPGGAPSCQERGLR*VHQVPGDRREG*DRRCSFALPHQ--KASIQRSHLRPEFA 454
GD+ +LP PS R L Q P + +G +R +P Q + + R E
Sbjct: 12 GDLSHFLPPPTPSSPSRSLGRRRQPPAQQAQGQGKRAKGVVPWQERRRRDRERKQREEDE 71
Query: 455 RRAGGLYQARP 487
R GL +A P
Sbjct: 72 RTMAGLAEAIP 82
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +3
Query: 195 RVVEHYSPAELHDHH*AVRRLVLGTSYDMETSRNIFLEALPHARSEACARFIKYLVIEEK 374
RVV Y A +H +R L G + T + ++ L AR + +KYL ++E
Sbjct: 345 RVVVAYGGAPIHQQ---LRELERGVEILVATPGRL-MDLLERAR--VSLQMVKYLALDEA 398
Query: 375 DKIEDAALLSLIRKL 419
D++ D IRK+
Sbjct: 399 DRMLDMGFEPQIRKI 413
>09_04_0290 -
16429495-16429559,16430040-16430316,16430410-16430571,
16431308-16431926,16431976-16432172
Length = 439
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 570 LISENSIVLCSKLAKLKIPACVFPP*NPGLA 478
L +S+ C +LA L + AC PP PG A
Sbjct: 126 LAVHSSVFSCDRLAYLNLFACDIPPLPPGFA 156
>03_01_0269 +
2080338-2080508,2081086-2081335,2081432-2082648,
2082933-2083083,2083247-2083563
Length = 701
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +1
Query: 34 YVATDFCDPTNGIRNVTQSFL-KNHTQE---LLLKIARGIDADNIVRDPSLIHNLDF 192
Y + C P N + + SF+ +N+ +E LL+ + R + + RDP+++H+L F
Sbjct: 227 YSGCETCSP-NLLSQLDGSFVPRNNLEEAILLLMLLLRKFNLKRLERDPTVMHHLTF 282
>02_03_0040 +
14262137-14262182,14262456-14262738,14262824-14262923,
14263027-14263293,14263378-14263455,14263552-14263653,
14263731-14263780,14263864-14263957,14264060-14264161,
14264855-14264960,14265056-14265414,14265572-14265646,
14265890-14265907
Length = 559
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = +3
Query: 198 VVEHYSPAELHDHH*AVRRLVLGTSYDMETSRNIFLEALPHARSEACARFIKYLVIEEKD 377
V+E P+ D+H + R + +D+E ++ ++++ L + A ++ EE D
Sbjct: 93 VLEELLPSHHDDYH-MMLRFLKARKFDVEKAKQMWVDMLQWRKEFAADTILEDFEFEEAD 151
Query: 378 KIED 389
K+ +
Sbjct: 152 KVAE 155
>06_03_1367 +
29607008-29607501,29608726-29608906,29609006-29609065,
29609486-29609649,29609723-29609888,29609889-29609957,
29610060-29610155,29610345-29610389,29610765-29610835,
29610996-29611062,29611150-29611200,29611276-29611686
Length = 624
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 342 RFIKYLVIEEKDKIEDAALLSLIRKLPFNVATF 440
+ K L +++ D I L++ +RKLPF +A F
Sbjct: 579 KLFKTLDVDDDDGISKDDLMASLRKLPFMIALF 611
>06_01_0188 - 1464961-1466814
Length = 617
Score = 27.9 bits (59), Expect = 8.5
Identities = 25/92 (27%), Positives = 33/92 (35%)
Frame = +2
Query: 245 CSKTGPRHQLRHGDIQEYLPGGAPSCQERGLR*VHQVPGDRREG*DRRCSFALPHQKASI 424
CS + RHQ+ + LP G RG +V GD R G CSF
Sbjct: 5 CSFSSSRHQMSTAQRFDILPCGFSKRGSRGDGAAPRVAGDARSG-ATTCSF--------- 54
Query: 425 QRSHLRPEFARRAGGLYQARPGFYGGNTHAGI 520
R+H P + + PG G H +
Sbjct: 55 -RTHPAPPVTQSVSWGAKPEPGGNGNGAHRAV 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,125,394
Number of Sequences: 37544
Number of extensions: 443214
Number of successful extensions: 1213
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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