Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20132
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47054| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_1005| Best HMM Match : GPP34 (HMM E-Value=0.16)                     29   4.9  
SB_24435| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_54208| Best HMM Match : fn3 (HMM E-Value=0)                         28   6.5  
SB_52054| Best HMM Match : zf-CCHC (HMM E-Value=6.6e-05)               28   6.5  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_47054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +3

Query: 297 IFLEALPHARSEACARFIKYLVIEEKDKIEDAALLSLIRKLPFN 428
           +F+E      S  C+RF+K LV    D++  +++LSL  K PFN
Sbjct: 168 VFVEHSYDTVSSRCSRFLKGLVPRAHDQLL-SSILSLSAKEPFN 210


>SB_1005| Best HMM Match : GPP34 (HMM E-Value=0.16)
          Length = 265

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 118 LLKIARGIDADNIVRDPSLIHN 183
           LLK+ARG+DA  + R P L HN
Sbjct: 212 LLKLARGVDALELGRAPILEHN 233


>SB_24435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 315 GAPPGRYSWMSPCRNWCLGPVFEQLNDGRVVQLGY 211
           G PP   +WM  C  + L  +FE++    +VQL +
Sbjct: 98  GTPPRCSAWMGQCVLYTLVVIFEKITIALIVQLQF 132


>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1292

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +1

Query: 157 VRDPSLIHNLDFIELLNTIAQLNYTTIIKLFEDWS*APVTTWRHPGISSWRRSLMPGARP 336
           VR+ +   +L F++ +    + NYT  ++ F      P + W+         +L P    
Sbjct: 555 VREANATGSLIFVDFVGLSVKTNYTVHVRAFNSKGAGPFSEWKEVSTGKAVPNLPPANVT 614

Query: 337 ALGSSST 357
           A  + ST
Sbjct: 615 ARATGST 621


>SB_52054| Best HMM Match : zf-CCHC (HMM E-Value=6.6e-05)
          Length = 437

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
 Frame = +3

Query: 270 SYDMETSRNIFLEALPHARSEACARFIKYLVIEEKDK----IEDAALLSLIRKLPFNVAT 437
           +Y  E S   F   L +     CARF+   VIEEK +     + + LL ++R +  N   
Sbjct: 311 AYGTEDSAGEFEAKLTYNNKSCCARFV---VIEEKARPILSRQTSELLGVLR-IQVNTVQ 366

Query: 438 FDQSLLEELEAFTKLG--PDFTAEI 506
            D+   E  E  T LG   D+ A+I
Sbjct: 367 EDELFEEYKECCTGLGKFKDYQAKI 391


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 197  SC*TL*PS*TTRPSLSCSKTGPRHQ 271
            SC  L P+     SLSC+ T PRHQ
Sbjct: 2231 SCSNLLPTSGCHASLSCASTHPRHQ 2255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,695,251
Number of Sequences: 59808
Number of extensions: 489274
Number of successful extensions: 1273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)