Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20132
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    29   3.3  
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    28   7.6  
AF016426-4|AAB65343.1|  335|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
            protein Y39A1B.3 protein.
          Length = 1499

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 16   TEYTVTYVATDFCDPTNGIRNVTQSFLK 99
            T   ++  A   CDPT  +R+V QSF K
Sbjct: 1235 TRGVLSEAARCICDPTRAVRDVAQSFFK 1262


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
            compensation protein protein.
          Length = 1455

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 16   TEYTVTYVATDFCDPTNGIRNVTQSFLK 99
            T   ++  A   CDPT  +R+V QSF K
Sbjct: 1191 TRGVLSEAARCICDPTRAVRDVAQSFFK 1218


>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
           protein C48B4.4c protein.
          Length = 1704

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -2

Query: 380 LILLFDHQV--LDEPSAGLAPGMRERLQE 300
           + L+ D +V  LDEP+AG+ PG R+ +Q+
Sbjct: 691 MALIGDSEVVLLDEPTAGMDPGARQDVQK 719


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
           protein C48B4.4b protein.
          Length = 1691

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -2

Query: 380 LILLFDHQV--LDEPSAGLAPGMRERLQE 300
           + L+ D +V  LDEP+AG+ PG R+ +Q+
Sbjct: 678 MALIGDSEVVLLDEPTAGMDPGARQDVQK 706


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
           protein C48B4.4a protein.
          Length = 1689

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -2

Query: 380 LILLFDHQV--LDEPSAGLAPGMRERLQE 300
           + L+ D +V  LDEP+AG+ PG R+ +Q+
Sbjct: 678 MALIGDSEVVLLDEPTAGMDPGARQDVQK 706


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
           cassette transporter protein.
          Length = 1704

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -2

Query: 380 LILLFDHQV--LDEPSAGLAPGMRERLQE 300
           + L+ D +V  LDEP+AG+ PG R+ +Q+
Sbjct: 691 MALIGDSEVVLLDEPTAGMDPGARQDVQK 719


>AF016426-4|AAB65343.1|  335|Caenorhabditis elegans Hypothetical
           protein W07B8.1 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 221 SWAIVFNNSIKSKLCINDGSL--TILSA 144
           SWA     S+  +LCIN G    TILSA
Sbjct: 104 SWAFAAAESMSDRLCINSGGFKNTILSA 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,728
Number of Sequences: 27780
Number of extensions: 364815
Number of successful extensions: 882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)