Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20132
(714 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29080.1 68414.m03560 peptidase C1A papain family protein con... 30 1.3
At3g13220.1 68416.m01654 ABC transporter family protein contains... 29 2.3
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont... 29 3.1
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit... 29 3.1
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit... 29 3.1
At5g17670.1 68418.m02071 expressed protein 28 5.3
At5g16290.2 68418.m01904 acetolactate synthase small subunit, pu... 28 5.3
At5g16290.1 68418.m01903 acetolactate synthase small subunit, pu... 28 5.3
At2g31810.3 68415.m03885 acetolactate synthase small subunit, pu... 28 5.3
At2g31810.2 68415.m03884 acetolactate synthase small subunit, pu... 28 5.3
At2g31810.1 68415.m03883 acetolactate synthase small subunit, pu... 28 5.3
At5g16310.1 68418.m01907 ubiquitin carboxyl-terminal hydrolase f... 28 7.1
At4g39380.1 68417.m05574 expressed protein 28 7.1
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 28 7.1
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 28 7.1
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 28 7.1
At1g01900.1 68414.m00107 subtilase family protein contains simil... 27 9.3
>At1g29080.1 68414.m03560 peptidase C1A papain family protein
contains similarity to cysteine protease SPCP1
GI:13491750 from [Ipomoea batatas]; contains Pfam
profile PF00112: Papain family cysteine protease
Length = 346
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 25 TVTYVATDFCDPTNGIRNVTQSFLKNHTQELLLKIARGIDAD--NIVRDPSLIHNLDFIE 198
T+ ++ + T+ + S + ++ Q+ +++ +R D + +R L NL FIE
Sbjct: 12 TIFFMDLKISEATSRVALYKPSSIVDYHQQWMIQFSRVYDDEFEKQLRLQVLTENLKFIE 71
Query: 199 LLNTIAQLNYTTIIKLFEDWS 261
N + +Y + F DW+
Sbjct: 72 SFNNMGNQSYKLGVNEFTDWT 92
>At3g13220.1 68416.m01654 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter; similar to white
protein GB:Q27256 [Anopheles gambiae]
Length = 685
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 470 GLQLFEQTLVEGGYVEWKLSDEGEQSCIFYLILLFDH-QVLDEPSAGL 330
GL+ +T V GG+V+ E +++ I Y IL+ +LDEP++GL
Sbjct: 212 GLERCRRTRVGGGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSGL 259
>At3g17920.1 68416.m02282 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 962
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 248 SKTGPRHQLRHGDIQEYLPGGAPSCQERGLR*VHQ 352
++ GP+H HG+ Y PG PS Q L HQ
Sbjct: 457 NRNGPKH---HGETMRYTPGPLPSFQITDLNQKHQ 488
>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1329
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Frame = -1
Query: 231 RVVQLGYSVQQLDKVQIVYQ*RVPDYIICVNASCYFQE*LLSVILQET--------LRDI 76
R+++ G +V++L K VYQ + + + + + L+ ++ET +D+
Sbjct: 443 RIIRSGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDV 502
Query: 75 SDSVGRIAEV----CGHISDGI 22
+DSVG ++V CG ++DG+
Sbjct: 503 TDSVGFQSDVCTFACGLVADGL 524
>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to Splicing factor 3B subunit 3
(Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
(Pre-mRNA splicing factor SF3b 130kDa subunit)
(SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
A subunit region
Length = 1379
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Frame = -1
Query: 231 RVVQLGYSVQQLDKVQIVYQ*RVPDYIICVNASCYFQE*LLSVILQET--------LRDI 76
R+++ G +V++L K VYQ + + + + + L+ ++ET +D+
Sbjct: 501 RIIRSGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDV 560
Query: 75 SDSVGRIAEV----CGHISDGI 22
+DSVG ++V CG ++DG+
Sbjct: 561 TDSVGFQSDVCTFACGLVADGL 582
>At5g17670.1 68418.m02071 expressed protein
Length = 309
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 602 YFRMYXDCPQYLDRMVWLQGLCNIGYSAEGYLRIIY 709
Y D + + + QGLC IG+SA G+L +Y
Sbjct: 98 YLNRIDDAVREANELAQGQGLCLIGHSAGGWLARVY 133
>At5g16290.2 68418.m01904 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 477
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 356 VLDEPSAGLAPGMRERLQEDIPGCLHVVTGA 264
V DE S+GL L ++PG L+++TGA
Sbjct: 297 VYDEDSSGLRSHTLSLLVANVPGVLNLITGA 327
>At5g16290.1 68418.m01903 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 477
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 356 VLDEPSAGLAPGMRERLQEDIPGCLHVVTGA 264
V DE S+GL L ++PG L+++TGA
Sbjct: 297 VYDEDSSGLRSHTLSLLVANVPGVLNLITGA 327
>At2g31810.3 68415.m03885 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 469
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 350 DEPSAGLAPGMRERLQEDIPGCLHVVTG 267
DE ++GL L DIPG L++VTG
Sbjct: 311 DEDTSGLRSHTLSLLVNDIPGVLNIVTG 338
>At2g31810.2 68415.m03884 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 492
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 350 DEPSAGLAPGMRERLQEDIPGCLHVVTG 267
DE ++GL L DIPG L++VTG
Sbjct: 311 DEDTSGLRSHTLSLLVNDIPGVLNIVTG 338
>At2g31810.1 68415.m03883 acetolactate synthase small subunit,
putative similar to gi:5931761 from Nicotiana
plumbaginifolia
Length = 491
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 350 DEPSAGLAPGMRERLQEDIPGCLHVVTG 267
DE ++GL L DIPG L++VTG
Sbjct: 311 DEDTSGLRSHTLSLLVNDIPGVLNIVTG 338
>At5g16310.1 68418.m01907 ubiquitin carboxyl-terminal hydrolase
family 1 protein similar to 26S proteasome regulatory
complex subunit p37A [Drosophila melanogaster]
GI:6434962; contains Pfam profile PF01088: Ubiquitin
carboxyl-terminal hydrolase, family 1
Length = 334
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = -1
Query: 612 ILKYFTTTLSM*SCLISENSIVLCSKLAKLKIPACVFPP*NPGLAW*RPPALRA 451
I+ T ++ S L++ +SI + S+L++LK A FPP GLA A+RA
Sbjct: 77 IINNACATQAILSVLMNSSSIDIGSELSELKQFAKEFPPELKGLAINNNEAIRA 130
>At4g39380.1 68417.m05574 expressed protein
Length = 518
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 54 RSDQRNQKCHAEFPEESHS 110
++D R CHA PE SHS
Sbjct: 387 QTDNRRAPCHAPLPESSHS 405
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 342 RFIKYLVIEEKDKIEDAALLSLIRKLPFNVATFDQSLL 455
R I YLV++E D++ D IRK+ + T Q+L+
Sbjct: 303 RQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLM 340
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 342 RFIKYLVIEEKDKIEDAALLSLIRKLPFNVATFDQSLL 455
R I YLV++E D++ D IRK+ + T Q+L+
Sbjct: 303 RQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLM 340
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 342 RFIKYLVIEEKDKIEDAALLSLIRKLPFNVATFDQSLL 455
R I YLV++E D++ D IRK+ + T Q+L+
Sbjct: 303 RQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLM 340
>At1g01900.1 68414.m00107 subtilase family protein contains
similarity to cucumisin-like serine protease GB:AAC18851
GI:3176874 from [Arabidopsis thaliana]
Length = 774
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 130 ARGIDADNIVRDPSLIHNLDFIELLNTIAQLNYTT 234
A +D V DP L+++ ++ LN + LNYT+
Sbjct: 614 AGNVDPTRAV-DPGLVYDTSTVDYLNYLCSLNYTS 647
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,792,920
Number of Sequences: 28952
Number of extensions: 337271
Number of successful extensions: 858
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -