Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20131
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    28   0.97 
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    28   1.3  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   5.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   6.9  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 218  LVLSSNFMTNSFPFD-TNLMRPVHCGSCKFQSAALYPLLDVLGGILKTNTSFFTKITL 48
            L   +N+ T ++ F  T  + PV    C+      + L+DV     + ++SF+T   L
Sbjct: 1269 LTYDANYTTGAYVFKATGDLDPVILNMCQSHHVIFWDLIDVATTFARVDSSFYTSENL 1326


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 203 NFMTNSFPFDTNLMRPVHCGSCKFQSAA 120
           N  +  FP+D  +  P  C +CKF+  A
Sbjct: 142 NEASRRFPYDYKIFFPNKCSTCKFEKPA 169


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 315 DDNGRAAYIG-LGFGDRSDSFDLNVALQDHFKW 410
           + +GR  Y G LG+ D + S + NV ++  FK+
Sbjct: 637 EQHGRGIYSGTLGYWDVTGSAEFNVIIRSAFKY 669


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 236 FANNSPLVLSSNFMTNSFPFDTNLMRPVH 150
           F   +PL   SNF++N F  DT  ++  H
Sbjct: 180 FTIPNPLQFISNFLSNLFSRDTRYLKSSH 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,955
Number of Sequences: 5004
Number of extensions: 50729
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)