Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20131
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139 80 2e-15
01_05_0697 + 24372233-24372328,24372523-24372554,24372871-243729... 70 2e-12
08_01_0045 + 322679-323347 29 2.3
07_03_0533 - 19178296-19178516,19178790-19178847,19179315-191793... 29 2.3
04_04_0479 - 25524753-25525426,25525736-25525819,25526255-255264... 28 5.4
10_08_0158 - 15298902-15299111,15300557-15300655,15301375-153014... 28 7.1
09_02_0327 - 7284829-7284889,7284946-7286126 28 7.1
03_05_1164 - 30863063-30863095,30863308-30864777 28 7.1
>10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139
Length = 287
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/62 (53%), Positives = 48/62 (77%)
Frame = +3
Query: 264 ALEAVTDSSRYFVVKIQDDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQESDQTP 443
A+E V DSSRYFV++I+D G+ A++GLGFG+R+++FD NVAL DH K++K+E E +
Sbjct: 87 AVETVLDSSRYFVLRIEDGRGKHAFVGLGFGERNEAFDFNVALSDHEKYVKREHEKEAAD 146
Query: 444 QG 449
G
Sbjct: 147 GG 148
Score = 74.5 bits (175), Expect = 6e-14
Identities = 31/68 (45%), Positives = 47/68 (69%)
Frame = +1
Query: 37 DTYESVILVKNEVFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKT 216
+ +E +LV EV V+KIPPRT++ GY+ +W + W+GR+R+VS G+ ++LED
Sbjct: 10 EAFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDRIWSGRLRVVSCGDRCEIRLEDPA 69
Query: 217 SGELFAKC 240
SG+LFA C
Sbjct: 70 SGDLFAAC 77
>01_05_0697 +
24372233-24372328,24372523-24372554,24372871-24372971,
24373050-24373122,24373267-24373298,24373482-24373651,
24374029-24374127,24375460-24375855
Length = 332
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/67 (43%), Positives = 45/67 (67%)
Frame = +1
Query: 37 DTYESVILVKNEVFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKT 216
+ E V+ E +V+ IPPR + YRA +WN+ + W G +++VSKG E ++KLEDK
Sbjct: 16 EAVELVLFQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGTLKVVSKGEECIIKLEDKN 75
Query: 217 SGELFAK 237
+GEL+A+
Sbjct: 76 TGELYAR 82
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Frame = +3
Query: 267 LEAVTDSSRYFVVKIQ---DDNGRAAYIGLGFGDRSDSFDLNVALQDHFKW 410
+E V DSSRYFV++++ D R A+IGLGF +R ++D AL DH K+
Sbjct: 93 VEPVIDSSRYFVLRVEENIDGRQRHAFIGLGFRERPQAYDFQAALHDHMKY 143
>08_01_0045 + 322679-323347
Length = 222
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 168 PHATCPLWLLQVPICCPISSVRCSGWYFKNEYFVL 64
P ++ P+WLL PI S+ CSG ++N VL
Sbjct: 41 PSSSPPVWLLSSPIRRSFSAADCSGSPWRNARVVL 75
>07_03_0533 -
19178296-19178516,19178790-19178847,19179315-19179370,
19179527-19179646,19180446-19180599,19180911-19181018,
19181134-19181197,19181342-19181518,19181679-19181824,
19181912-19181941,19181999-19182150,19182266-19182347
Length = 455
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 312 QDDNGRAAYIGLGFGDRSDSFDLNVAL 392
+D NG A YIG G GD + SFD+ L
Sbjct: 281 EDPNGHAVYIGTGRGDLA-SFDMRTEL 306
>04_04_0479 -
25524753-25525426,25525736-25525819,25526255-25526483,
25526910-25527357,25528462-25528569,25528681-25528806,
25528887-25528981,25529062-25529147,25529253-25529408,
25529523-25529766
Length = 749
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 287 AISYSFQCNSWYLSIGHFANNSPLVLSSNF 198
A+ +S Q N L IGH + PLVL+S F
Sbjct: 495 AVPFSGQNNMKILCIGHGGGSLPLVLASKF 524
>10_08_0158 -
15298902-15299111,15300557-15300655,15301375-15301443,
15301535-15301681,15301762-15301839,15302221-15302264,
15302521-15302603,15303394-15303620
Length = 318
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 515 GSEGSRSRRGVPGASGGGFVA 577
GSEGS + R PG GGG A
Sbjct: 17 GSEGSPTGRAAPGMQGGGSAA 37
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 418 KNKRAIKHHRDNWILDLK 471
KN R+++ HR N+I DLK
Sbjct: 255 KNPRSVRKHRHNYIFDLK 272
>03_05_1164 - 30863063-30863095,30863308-30864777
Length = 500
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 539 GVTCCPHSHLFSNFHVDFN 483
GV CC S LF ++HV+F+
Sbjct: 270 GVLCCRCSDLFDSYHVNFS 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,619,331
Number of Sequences: 37544
Number of extensions: 326311
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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