Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20131
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   29   3.1  
SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)                    28   5.5  
SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_39978| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)             27   9.6  

>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 364 DLSPNPRPIYAARPLSSCIFTTK*RELSVTASSATP---GIYLLGTSQIIRHLFY 209
           D+SP   P     P  S I   + R L VTA    P    I+++ +S+I+ HL Y
Sbjct: 53  DISPYGIPQTVTSPSDSTILRQQGRSLRVTAPPPPPLCFSIWMVPSSRIVSHLHY 107


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +1

Query: 73  VFVFKIPPRTSNRGYRAADWNLQEPQ---WTGRMRLVSKGNELVMKLED 210
           V+ F  P + S  G  AAD +  + Q   W G  R+VSK  E +++L++
Sbjct: 24  VYCFDSPVQLSLAGVLAADTSAYKEQVASWDGEKRVVSKHAESLLQLDN 72


>SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 354 GDRSDSFDLNVALQDHFKW 410
           GD  +SFD+   L+D+FKW
Sbjct: 121 GDLKESFDIGHILEDYFKW 139


>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
          Length = 1243

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 387 QHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNNV 289
           QHL Q  Q   Q+Q + +QH   HL   +Q  +
Sbjct: 277 QHLQQQRQQRQQLQQQQIQHHKQHLQQQRQQEI 309


>SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 361 LSPNPRPIYAARPLSSCIFTTK*RELSVTASSATPGIYL 245
           L P P P+YA + + + IF ++ R +S         +Y+
Sbjct: 266 LPPQPNPVYATKGMRTVIFGSRIRTVSFEGKKVLRPVYM 304


>SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 266 CNSWYLSIGHFANNSPLVL 210
           C SWY  + H   N+P+VL
Sbjct: 573 CMSWYPEVSHHCPNTPIVL 591


>SB_39978| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
          Length = 429

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 133 NLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFA 234
           NLQ PQ T R RL S  N ++   E + +  LFA
Sbjct: 294 NLQLPQATQRRRLSSARNRIISLEEIRATNMLFA 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,146,362
Number of Sequences: 59808
Number of extensions: 379306
Number of successful extensions: 1037
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)