Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20131
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical ...    93   2e-19
AC024748-3|AAO38567.1|   69|Caenorhabditis elegans Hypothetical ...    77   1e-14
AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine re...    31   0.52 
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U39667-2|AAQ91910.1|  426|Caenorhabditis elegans Xo lethal prote...    28   4.8  
L35129-1|AAA67047.1|  426|Caenorhabditis elegans xol-1 protein.        28   4.8  
U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine rec...    28   6.4  

>AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.3a protein.
          Length = 236

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 41/74 (55%), Positives = 55/74 (74%)
 Frame = +1

Query: 34  MDTYESVILVKNEVFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDK 213
           M  YE+V++VK +VFV++IPP     G++AADWNL  P WTGRMRLV+ G  L M+LED 
Sbjct: 1   MGDYENVLMVKPKVFVYRIPP-IGTSGHKAADWNLDSPAWTGRMRLVAIGKRLEMRLEDG 59

Query: 214 TSGELFAKCPIDKY 255
            + +L+AKCPID +
Sbjct: 60  ETCDLYAKCPIDAH 73



 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 40/78 (51%), Positives = 59/78 (75%), Gaps = 3/78 (3%)
 Frame = +3

Query: 255 PGVALEAVTDSSRYFVVKIQDDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQE-- 428
           PG A+EAV+DSSRYFV+++Q+DNG+ A++G GF +R D+FD NV LQDHF+++++  E  
Sbjct: 74  PGNAIEAVSDSSRYFVIRLQNDNGQQAFVGCGFQERGDAFDFNVTLQDHFRYIERSAELE 133

Query: 429 -SDQTPQGQLDLGFKDGE 479
             D +    LDL FK+G+
Sbjct: 134 KQDLSAGPSLDLAFKEGQ 151


>AC024748-3|AAO38567.1|   69|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.3b protein.
          Length = 69

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 34/59 (57%), Positives = 44/59 (74%)
 Frame = +1

Query: 34  MDTYESVILVKNEVFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLED 210
           M  YE+V++VK +VFV++IPP     G++AADWNL  P WTGRMRLV+ G  L M+LED
Sbjct: 1   MGDYENVLMVKPKVFVYRIPP-IGTSGHKAADWNLDSPAWTGRMRLVAIGKRLEMRLED 58


>AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 3 protein.
          Length = 341

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -2

Query: 129 ICCPISSVRCSGWYFK-----NEYFVLH*NNTFISIHCL*KIML 13
           +C PIS       YF      N   VL  NNTF+ IHCL +I+L
Sbjct: 32  MCIPISIYSLWRIYFSVKLHFNSKIVLFTNNTFVLIHCLARIVL 75


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 248 SIGHFAN-NSPLVLSSNFMTNSFPFDTNLMRPVHCGSCKFQSA 123
           ++  FAN  S  + S N      P+ TNL + ++CG+ K+  A
Sbjct: 787 TLNMFANVKSACINSLNGTAWCNPYSTNLRKAIYCGAAKYAPA 829


>U39667-2|AAQ91910.1|  426|Caenorhabditis elegans Xo lethal protein
           1, isoform c protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 311 YFHNKIT*AISYSFQCNSWYLSIGHFAN--NSPLVLSSNFMTNSFPFDTNLMRPVHC 147
           +F +++   I+YS Q   +YLS+ HF+N  + PL  S  F+T S   +    + + C
Sbjct: 312 FFDDELIEKIAYSAQ---YYLSMTHFSNRISIPLFSSLVFLTVSIVINAMCHKSIFC 365


>L35129-1|AAA67047.1|  426|Caenorhabditis elegans xol-1 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 311 YFHNKIT*AISYSFQCNSWYLSIGHFAN--NSPLVLSSNFMTNSFPFDTNLMRPVHC 147
           +F +++   I+YS Q   +YLS+ HF+N  + PL  S  F+T S   +    + + C
Sbjct: 312 FFDDELIEKIAYSAQ---YYLSMTHFSNRISIPLFSSLVFLTVSIVINAMCHKSIFC 365


>U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine
           receptor, class v protein32 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -2

Query: 360 YHQIQDRYMQHDHYHLVFSQQNNVSYQLQLPVQLLVFI 247
           Y  +++ Y ++ HY++  +  NN+ Y L +    ++F+
Sbjct: 74  YSFLKEFYFEYQHYYVAAASYNNIYYFLYIRCTGIIFL 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,360,837
Number of Sequences: 27780
Number of extensions: 295386
Number of successful extensions: 959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)