Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20131
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03900.1 68414.m00374 expressed protein                             76   2e-14
At3g58600.1 68416.m06531 expressed protein hypothetical protein ...    66   2e-11
At2g41490.1 68415.m05125 UDP-GlcNAc:dolichol phosphate N-acetylg...    28   4.5  
At1g50500.1 68414.m05664 membrane trafficking VPS53 family prote...    28   4.5  
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein...    28   5.9  
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein...    28   5.9  
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein...    28   5.9  
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ...    27   7.8  
At1g71400.1 68414.m08246 disease resistance family protein / LRR...    27   7.8  

>At1g03900.1 68414.m00374 expressed protein
          Length = 272

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 32/71 (45%), Positives = 49/71 (69%)
 Frame = +1

Query: 37  DTYESVILVKNEVFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKT 216
           +T+E  +LV  EV V+KIPPRT++ GY+  +W   +  W+GR+R+VS  +   ++LED  
Sbjct: 10  ETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSN 69

Query: 217 SGELFAKCPID 249
           SG+LFA C +D
Sbjct: 70  SGDLFAACFVD 80



 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 30/65 (46%), Positives = 47/65 (72%)
 Frame = +3

Query: 264 ALEAVTDSSRYFVVKIQDDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQESDQTP 443
           ++E   DSSRYFV++I D  G+ A+IGLGF +R+++FD NVAL DH K++++E+E +   
Sbjct: 87  SVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKETGE 146

Query: 444 QGQLD 458
             + D
Sbjct: 147 TSESD 151


>At3g58600.1 68416.m06531 expressed protein hypothetical protein
           F21M11.17 - Arabidopsis thaliana, EMBL:AC003027
          Length = 302

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 29/66 (43%), Positives = 46/66 (69%)
 Frame = +1

Query: 70  EVFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAKCPID 249
           E +V+ IPPR +   YRA +W++ +  W G +++VSKG E ++KL DKT+GEL+A+  + 
Sbjct: 41  ECYVYLIPPRKTAASYRADEWDVNKWAWEGALKVVSKGEECIIKLVDKTTGELYAQAFL- 99

Query: 250 KYQELH 267
           +  ELH
Sbjct: 100 REGELH 105



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 8/79 (10%)
 Frame = +3

Query: 267 LEAVTDSSRYFVVKIQ---DDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQESDQ 437
           +EAV DSSRYFV++++   D   R A+IGLGF +R++++D   AL DH K+L K++ +++
Sbjct: 107 VEAVIDSSRYFVLRVEEKIDGRVRHAFIGLGFRERTEAYDFQAALHDHMKYLNKKKTAEE 166

Query: 438 TPQ-----GQLDLGFKDGE 479
             Q       +D   K+GE
Sbjct: 167 MEQHYQNTSSVDYSLKEGE 185


>At2g41490.1 68415.m05125 UDP-GlcNAc:dolichol phosphate
           N-acetylglucosamine-1-phosphate transferase identical to
           GI:5804772
          Length = 431

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 338 ICSTTIIILYFHNKIT*AISYSFQCNSWYLSIGHFANNSPLVLSSNFM--TNSFPFDTN 168
           +CS  + +L FH K+   +  S   N+    +G F     + +++ ++   N F FD N
Sbjct: 59  LCSLYLYLLCFHYKVDNELKRSILINAGLSLVGFFVTLKMIPVTARYVLRRNMFGFDIN 117


>At1g50500.1 68414.m05664 membrane trafficking VPS53 family protein
           contains Pfam domain PF04100: Vps53-like, N-terminal
          Length = 798

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -2

Query: 465 IQDPIVPVVFDRSLVLFSTI*NGLEVQHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNNVS 286
           +++ +V     R L  +  I  G E+  LD+T + Y  I+ R   ++    +F    +V 
Sbjct: 213 VREELVNNFCSRELTSYEQIFEGAELAKLDKTERRYAWIKRRIRTNEEIWKIFPASWHVP 272

Query: 285 YQL 277
           Y+L
Sbjct: 273 YRL 275


>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 387 QHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNNVS 286
           Q  +Q +  +HQ       HDH+H + S  NN S
Sbjct: 175 QEQEQDHHHHHQYISTNNDHDHHHHIDSNSNNHS 208


>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 387 QHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNNVS 286
           Q  +Q +  +HQ       HDH+H + S  NN S
Sbjct: 175 QEQEQDHHHHHQYISTNNDHDHHHHIDSNSNNHS 208


>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 387 QHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNNVS 286
           Q  +Q +  +HQ       HDH+H + S  NN S
Sbjct: 175 QEQEQDHHHHHQYISTNNDHDHHHHIDSNSNNHS 208


>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -3

Query: 266 CNSWYLSIGHFANNSPLVLSSNFMTNSFPFDTNLMRPVHCGSCKFQS 126
           C S    I H +NN PL+LS    T+++  D+   R  HC +C FQ+
Sbjct: 436 CASLPRKIRHVSNNKPLILS----TDTYLKDSPRQRR-HCSAC-FQN 476


>At1g71400.1 68414.m08246 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 847

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 251 LSIGHFANNSPLVLSSNFMTNSFPFDTNL 165
           +S  +    S  VLSSN  T++FPFD ++
Sbjct: 272 ISFANLTKLSIFVLSSNNFTSTFPFDMSI 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,754
Number of Sequences: 28952
Number of extensions: 266184
Number of successful extensions: 754
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)