Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20129
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.9  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 314 ETNECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVFGF 436
           + NEC S+ C N G  + C +        ++  +C C  GF
Sbjct: 298 DINECLSNPCSNAG-TLDCVQL-------VNDYHCNCKLGF 330



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 231 CADGISNSFCGIYVAQSD 178
           C+DG S S+C   + + D
Sbjct: 172 CSDGYSGSYCQTEINECD 189



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 314 ETNECYSSSCKNVG 355
           E NEC S+ C+N G
Sbjct: 184 EINECDSAPCQNGG 197


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 497 SPSIALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHS 619
           +PS A + +E MS    L  ED     A  +  +   ++HS
Sbjct: 320 TPSDATKALEKMSELSKLGGEDLFRTMANAAPGNSASNRHS 360


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 186  EQHKCRKSCC*CHPHKLRASWNGKMIQAANGEV 284
            EQ   + +C       +R SW    + AANG +
Sbjct: 1101 EQPPDKATCTTLTAQTIRVSWVSPPLTAANGVI 1133


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,179
Number of Sequences: 336
Number of extensions: 3031
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)