Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20129
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                 105   4e-23
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   90   2e-18
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              64   7e-11
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   1e-08
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              53   2e-07
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      52   4e-07
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            42   5e-04
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                38   0.010
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)                  30   1.5  
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_28304| Best HMM Match : zf-C2H2 (HMM E-Value=2.8026e-45)            29   4.5  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.2  
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       28   7.9  

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score =  105 bits (251), Expect = 4e-23
 Identities = 50/85 (58%), Positives = 66/85 (77%)
 Frame = +3

Query: 255 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLD 434
           KM+ + +GEVT+TNDGATIL  M V H  AK++VELS++QD E GDGTT VVV+AGA L+
Sbjct: 57  KMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLE 116

Query: 435 SAEKLLQKGIHPTVISDGFQKALQL 509
            AE+LL  GIHP  I+DG++ A ++
Sbjct: 117 HAEQLLDWGIHPIRIADGYELAAKI 141



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 22/56 (39%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
 Frame = +2

Query: 506 IALQVVENMST--PVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVME 667
           IAL+ +++++   PVD +N+++L++ A T+L SK+VS+    LA IAV A+ +V +
Sbjct: 141 IALEHMDSIADNFPVDKDNKESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVAD 196



 Score = 34.3 bits (75), Expect = 0.091
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +1

Query: 187 SNINAAKAVADAIRTSLGPRGMER*FKQP 273
           S+I AA+AVA  ++TSLGP+GM++    P
Sbjct: 34  SHILAARAVASILKTSLGPKGMDKMMVSP 62


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 42/78 (53%), Positives = 56/78 (71%)
 Frame = +3

Query: 273 NGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLDSAEKLL 452
           NG + +TNDGATILK + + +PAAK+LVELS+ QD E GDGTTSV V+    L  AEKL+
Sbjct: 55  NGNIQVTNDGATILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLV 114

Query: 453 QKGIHPTVISDGFQKALQ 506
              IHP  I  G++K+++
Sbjct: 115 SCKIHPQTIVAGWRKSVK 132



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 157 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMER 258
           ++ +    RLS+   A A+ D ++++LGP+GM++
Sbjct: 14  EEERAETARLSSFVGAIAIGDLVKSTLGPKGMDK 47



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 521 VENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAI 652
           V++ S P     +  L+  A T+L+SK++ QH    A +AV A+
Sbjct: 143 VDHSSDPEKFRED--LMNIARTTLSSKILVQHRDHFAKLAVDAV 184


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 36/72 (50%), Positives = 53/72 (73%)
 Frame = +3

Query: 288 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLDSAEKLLQKGIH 467
           +TNDG  IL+++ V HPAAK ++E+SR QD E GDGTTSV+++AG F+  AE  L++ +H
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60

Query: 468 PTVISDGFQKAL 503
           PT I   ++ A+
Sbjct: 61  PTQIIAAYRLAM 72


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/62 (48%), Positives = 45/62 (72%)
 Frame = +3

Query: 318 QMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLDSAEKLLQKGIHPTVISDGFQK 497
           ++ V HPAAK ++E+SR QD E GDGTTSV+++AG F+  AE  L++ +HPT I   ++ 
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267

Query: 498 AL 503
           A+
Sbjct: 268 AM 269


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 28/50 (56%), Positives = 40/50 (80%)
 Frame = +1

Query: 109 PKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMER 258
           P+A     +++ + +KDK KP +IR++NI AAKAVADAIRTSLGP+GM++
Sbjct: 2   PEAKAGRNQSHKTAFKDKEKPQEIRMTNITAAKAVADAIRTSLGPKGMDK 51



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +3

Query: 255 KMIQAANGEVTITNDGATI 311
           KMIQ  NG+VTITNDGATI
Sbjct: 51  KMIQGGNGDVTITNDGATI 69


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
 Frame = +3

Query: 285 TITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLDSAEKLLQKGI 464
           T+   G   ++   + HP A ++  ++ AQD   GDGTTS V+I G  L  A+  + +G+
Sbjct: 157 TMNPFGQNGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGL 216

Query: 465 HPTVISDGFQ----KALQLL 512
           HP ++++GF+    KAL++L
Sbjct: 217 HPRLVTEGFEVAKKKALEVL 236


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 21/43 (48%), Positives = 33/43 (76%)
 Frame = +3

Query: 255 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIE 383
           K+I    G+ TI+NDGATI+  + ++HPAAK LV+++++QD E
Sbjct: 682 KLIVDGRGKATISNDGATIINLLDIVHPAAKTLVDIAKSQDAE 724



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/34 (50%), Positives = 26/34 (76%)
 Frame = +1

Query: 157 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMER 258
           D S+     +SNI+A + +ADA+RT+LGPRGM++
Sbjct: 649 DASQGIPQLISNIDACQFIADAVRTTLGPRGMDK 682


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = +3

Query: 360 LSRAQDIEAGDGTTSVVVIAGAFLDSAEKLLQKGIHPTVISDGFQKALQ 506
           LS+ QD E GDGTTSV V+A   L  AEKL+   IHP  I  G++K+++
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVK 50



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 560 DALLKAAATSLNSKVVSQHSTILAPIAVQAI 652
           D L+  A T+L+SK++ QH    A +AV A+
Sbjct: 72  DDLMNIARTTLSSKILVQHRDHFAKLAVDAV 102


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 35/53 (66%)
 Frame = +3

Query: 258 MIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVI 416
           M+++++G + ITN G+ IL+ +++ +P  +M+VE +R+     G G +  ++I
Sbjct: 28  MLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGASYFIII 80


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = +3

Query: 258 MIQAANGEVTITNDGATILKQMSVIHP----AAKMLVELSRAQDIEAGDGTTSVVVIAGA 425
           +I+ + G   IT DG T+ K + +        A+++ +++   + EAGDGTT+  V+A +
Sbjct: 95  IIEQSFGGPKITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARS 154

Query: 426 FLDSAEKLLQKGIHPTVIS 482
                   + KG +P  +S
Sbjct: 155 IATEGFLHVSKGANPQEVS 173


>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
          Length = 559

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +3

Query: 339 AAKMLVELSRAQDIEAGDGTTSVVVIAGAFLDSAEKLLQKGIHPTVISDGFQKAL 503
           A++ML E+SR      GD +     ++G  L   EKLL+  +HP  I  G  K L
Sbjct: 238 ASQMLYEVSRL----LGDKSIVASFVSGVDLSRQEKLLKDSLHPPRIVIGTPKRL 288


>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 545 PLELTYFRPPVKQLKGFLETIRNYSWMYAFLKKFLSRIQKRTSNNNY*CCSIT 387
           P+   +FRP V Q  GFL  +RN+        +  S +   TSN +   C+I+
Sbjct: 289 PVAGLFFRPFVSQSFGFLPLLRNFFGRMTRAPQDSSCLSSNTSNISLHFCTIS 341


>SB_28304| Best HMM Match : zf-C2H2 (HMM E-Value=2.8026e-45)
          Length = 243

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 349 CW*NYLVLKILKLVMEQHQXXXXXVRFWILLRNFFRKAYIQL*FLMVS-KKPFNCFTGGR 525
           C  +Y  L  L+L M  H       +  + L++F + A +   F + S +KPF C   GR
Sbjct: 111 CGKSYARLSTLRLHMRTHSGVKPY-QCMVCLKSFTQAANLTAHFRIHSGEKPFRCRVCGR 169

Query: 526 KYVNSSGL 549
           ++  SS +
Sbjct: 170 QFSQSSSV 177


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 26.2 bits (55), Expect(2) = 5.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 192 HKCRKSCC*CHPHKLRASW 248
           H  +   C CHP K +A+W
Sbjct: 328 HPTKTQACLCHPTKTQANW 346



 Score = 20.6 bits (41), Expect(2) = 5.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 222 HPHKLRASWNGKMIQAAN 275
           HP K +A+WN      AN
Sbjct: 358 HPTKTQANWNQASKTQAN 375


>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +2

Query: 491  PKSPSIALQVVENM-----STPVDLNNEDALLKAAATSLNSKVVSQHSTILAPI 637
            P S + ALQ+  N+     S P+ LN E   +  AAT    K+ SQH  I +P+
Sbjct: 857  PNSENEALQLHNNLRAIHGSQPMRLNKE---MSDAATDWAKKMASQHKLIHSPL 907


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 243  SWNGKMIQAANGEVTITNDGATILKQMS 326
            ++NGK +  ++G+VT+TN   TI+K  S
Sbjct: 924  TFNGKPL-TSHGQVTVTNQSVTIIKARS 950


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,768,723
Number of Sequences: 59808
Number of extensions: 356832
Number of successful extensions: 922
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)