Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20129
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 118 5e-27
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 107 9e-24
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 99 2e-21
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 95 5e-20
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 91 8e-19
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 87 8e-18
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 78 5e-15
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 78 5e-15
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 75 4e-14
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 74 1e-13
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 51 8e-07
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 50 1e-06
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 50 1e-06
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 48 6e-06
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 47 1e-05
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 42 5e-04
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 40 0.002
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 38 0.005
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 36 0.019
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 35 0.057
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 34 0.075
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A... 29 3.7
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 28 4.9
At1g65410.1 68414.m07421 ABC transporter family protein contains... 28 6.5
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 118 bits (283), Expect = 5e-27
Identities = 58/82 (70%), Positives = 64/82 (78%)
Frame = +3
Query: 255 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLD 434
KMI ANGEV ITNDGATIL +M V+ PAAKMLVELS++QD AGDGTT+VVVIAGA L
Sbjct: 55 KMISTANGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLK 114
Query: 435 SAEKLLQKGIHPTVISDGFQKA 500
+ LL GIHPTVISD KA
Sbjct: 115 ECQSLLTNGIHPTVISDSLHKA 136
Score = 67.3 bits (157), Expect = 9e-12
Identities = 29/54 (53%), Positives = 46/54 (85%)
Frame = +2
Query: 509 ALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEP 670
A+ ++ M+ PV+L + D+L+K+A+TSLNSKVVSQ+ST+LAP+AV A+ +V++P
Sbjct: 140 AIDILTAMAVPVELTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDP 193
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/52 (53%), Positives = 37/52 (71%)
Frame = +1
Query: 103 MAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMER 258
MA K G KA S V D + DIR +NIN+A+AV+DA+RTSLGP+GM++
Sbjct: 8 MASKPRGS--KAESFV--DNKRREDIRFANINSARAVSDAVRTSLGPKGMDK 55
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 107 bits (256), Expect = 9e-24
Identities = 49/82 (59%), Positives = 66/82 (80%)
Frame = +3
Query: 255 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLD 434
KM+Q +G++TITNDGATIL+QM V + AK++VELSR+QD E GDGTT VVV+AGA L+
Sbjct: 55 KMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLE 114
Query: 435 SAEKLLQKGIHPTVISDGFQKA 500
AE+ L +GIHP I++G++ A
Sbjct: 115 QAERQLDRGIHPIRIAEGYEMA 136
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1
Query: 154 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMER*FKQP 273
K + + D + +NI A KAVA +R+SLGP+GM++ + P
Sbjct: 21 KTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGP 60
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/41 (41%), Positives = 29/41 (70%)
Frame = +2
Query: 545 DLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVME 667
D+NN + L++ T+L+SK+V++ LA IAV+A+ AV +
Sbjct: 154 DVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVAD 194
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 99.1 bits (236), Expect = 2e-21
Identities = 46/84 (54%), Positives = 59/84 (70%)
Frame = +3
Query: 255 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLD 434
KM+ A G + +TNDG IL+++ V HPAAK ++ELSR QD E GDGTTSV+V+AG L
Sbjct: 46 KMLLDAGGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLH 105
Query: 435 SAEKLLQKGIHPTVISDGFQKALQ 506
AE L+K HPTVI + KAL+
Sbjct: 106 VAEAFLEKNYHPTVICRAYIKALE 129
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 190 NINAAKAVADAIRTSLGPRGM 252
NI A+KAVAD IRT+LGPR M
Sbjct: 24 NIQASKAVADIIRTTLGPRSM 44
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 94.7 bits (225), Expect = 5e-20
Identities = 46/84 (54%), Positives = 60/84 (71%)
Frame = +3
Query: 255 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLD 434
KM+ G+VTITNDGATIL+ + V HPAAK+LVEL+ QD E GDGTTSVV++A L
Sbjct: 46 KMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLK 105
Query: 435 SAEKLLQKGIHPTVISDGFQKALQ 506
A L++ IHPT I G++ A++
Sbjct: 106 RANDLVRNKIHPTSIISGYRLAMR 129
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 139 NSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMER 258
N + D+ D+R N+ A +AV++ ++TSLGP G+++
Sbjct: 7 NPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDK 46
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 90.6 bits (215), Expect = 8e-19
Identities = 43/73 (58%), Positives = 55/73 (75%)
Frame = +3
Query: 282 VTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLDSAEKLLQKG 461
VT+TNDGATILK + + +PAAK+LV++S+ QD E GDGTTSVVV+AG L AEKL+
Sbjct: 56 VTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASK 115
Query: 462 IHPTVISDGFQKA 500
IHP I G++ A
Sbjct: 116 IHPMTIIAGYRMA 128
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/40 (30%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Frame = +1
Query: 148 VYKD---KSKPTDIRLSNINAAKAVADAIRTSLGPRGMER 258
++KD + K R+++ A A++D ++++LGP+GM++
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDK 45
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 515 QVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAI 652
+V++N ++ LLK A T+L SK++SQ A +AV A+
Sbjct: 139 RVIDNKDNAEKFRSD--LLKIAMTTLCSKILSQDKEHFAEMAVDAV 182
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 87.4 bits (207), Expect = 8e-18
Identities = 38/85 (44%), Positives = 60/85 (70%)
Frame = +3
Query: 255 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLD 434
K+I G VTI+NDGATI+K + ++HPAAK+LV+++++QD E GDGTT+VV++A FL
Sbjct: 50 KLIHDDKGSVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLK 109
Query: 435 SAEKLLQKGIHPTVISDGFQKALQL 509
A+ ++ G+H + ++ A L
Sbjct: 110 EAKPFIEDGVHAQNLIRSYRTASTL 134
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +1
Query: 184 LSNINAAKAVADAIRTSLGPRGMER 258
+SNINA AV D +RT+LGPRGM++
Sbjct: 26 VSNINACTAVGDVVRTTLGPRGMDK 50
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 78.2 bits (184), Expect = 5e-15
Identities = 33/82 (40%), Positives = 54/82 (65%)
Frame = +3
Query: 255 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLD 434
KM+ +G++ +T DG T+LK+M + +P A M+ + AQD +GDGTTS V+ G +
Sbjct: 44 KMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMK 103
Query: 435 SAEKLLQKGIHPTVISDGFQKA 500
+E+ + +G+HP V+ DGF+ A
Sbjct: 104 QSERCIDEGMHPRVLVDGFEIA 125
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 193 INAAKAVADAIRTSLGPRG 249
INAAK + D ++++LGP+G
Sbjct: 23 INAAKGLQDVLKSNLGPKG 41
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 78.2 bits (184), Expect = 5e-15
Identities = 33/82 (40%), Positives = 54/82 (65%)
Frame = +3
Query: 255 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLD 434
KM+ +G++ +T DG T+LK+M + +P A M+ + AQD +GDGTTS V+ G +
Sbjct: 44 KMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMK 103
Query: 435 SAEKLLQKGIHPTVISDGFQKA 500
+E+ + +G+HP V+ DGF+ A
Sbjct: 104 QSERCIDEGMHPRVLVDGFEIA 125
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 193 INAAKAVADAIRTSLGPRG 249
INAAK + D ++++LGP+G
Sbjct: 23 INAAKGLQDVLKSNLGPKG 41
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 74.9 bits (176), Expect = 4e-14
Identities = 34/83 (40%), Positives = 54/83 (65%)
Frame = +3
Query: 255 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLD 434
KM+ ++ +TND ATI+ ++ + HPAAK+LV ++AQ E GDG + AG L
Sbjct: 54 KMVINHLDKLFVTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQ 113
Query: 435 SAEKLLQKGIHPTVISDGFQKAL 503
+AE+L++ G+HP+ I G+ KA+
Sbjct: 114 NAEELIRMGLHPSEIISGYTKAV 136
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 151 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMER*FKQPMEKL 285
Y+ S + + NI A K ++ RTSLGP GM + ++KL
Sbjct: 19 YRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKL 63
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/60 (56%), Positives = 46/60 (76%)
Frame = +3
Query: 321 MSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLDSAEKLLQKGIHPTVISDGFQKA 500
M V + AK++VELSR+QD E GDGTT VVV+AGA L+ AE+ L +GIHP I++G++ A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/41 (41%), Positives = 29/41 (70%)
Frame = +2
Query: 545 DLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVME 667
D+NN + L++ T+L+SK+V++ LA IAV+A+ AV +
Sbjct: 78 DVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVAD 118
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 50.8 bits (116), Expect = 8e-07
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +3
Query: 258 MIQAANGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGA 425
++++ G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A
Sbjct: 90 VLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 149
Query: 426 FLDSAEKLLQKGIHPTVISDGFQKALQLLYRWSKI 530
F+ K++ G +P +I+ G +K + L K+
Sbjct: 150 FIAEGVKVVAAGANPVLITRGIEKTAKALVNELKL 184
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +3
Query: 258 MIQAANGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGA 425
++++ G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A
Sbjct: 94 VLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 153
Query: 426 FLDSAEKLLQKGIHPTVISDGFQKALQLL 512
F+ K++ G +P +I+ G +K + L
Sbjct: 154 FIAEGVKVVAAGANPVLITRGIEKTAKAL 182
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +3
Query: 258 MIQAANGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGA 425
++++ G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A
Sbjct: 94 VLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 153
Query: 426 FLDSAEKLLQKGIHPTVISDGFQKALQLL 512
F+ K++ G +P +I+ G +K + L
Sbjct: 154 FIAEGVKVVAAGANPVLITRGIEKTAKAL 182
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Frame = +3
Query: 258 MIQAANGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGA 425
++++ G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A
Sbjct: 90 VLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQG 149
Query: 426 FLDSAEKLLQKGIHPTVISDGFQKALQLL 512
+ K++ G +P +I+ G +K + L
Sbjct: 150 LIAEGVKVVAAGANPVLITRGIEKTTKAL 178
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +3
Query: 258 MIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIE----AGDGTTSVVVIAGA 425
++Q G I NDG T+LK++ + P + V+L R + AGDG+T+ +++A
Sbjct: 78 VLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHG 137
Query: 426 FLDSAEKLLQKGIHPTVISDGFQKALQLL 512
+ K++ G +P ++ G +K + L
Sbjct: 138 LITEGIKVISAGTNPIQVARGIEKTTKAL 166
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +3
Query: 258 MIQAANGEVTITNDGATILKQM----SVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGA 425
++ A + + NDG TI K + ++ + A ++ E++ + AGDGTT+ +++A
Sbjct: 70 VVLAEKDTIKVINDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAGDGTTTAIILARE 129
Query: 426 FLDSAEKLLQKGIHPTVISDGFQKALQLLYR 518
+ + + G + + +G K ++ L R
Sbjct: 130 MIKAGSLAIAFGANAVSVKNGMNKTVKELVR 160
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +1
Query: 154 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMER 258
K + K D + +NI+A KAVA +R+SLGP+GME+
Sbjct: 21 KTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +3
Query: 258 MIQAANGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGA 425
+I+++ G IT DG T+ K +S A A+++ +++ A + AGDGTT V+ A
Sbjct: 69 IIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAGDGTTCATVLTQA 128
Query: 426 FLDSAEKLLQKGIHPTVISDGFQKAL 503
L K + G++ + G A+
Sbjct: 129 ILIEGCKSVAAGVNVMDLRVGINMAI 154
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +3
Query: 276 GEVTITNDGATILKQM----SVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAFLDSAE 443
G + NDG TI + + ++ + A ++ E++ + AGDGTT+ ++A +
Sbjct: 89 GSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGL 148
Query: 444 KLLQKGIHPTVISDGFQKALQ 506
+ G +P + G K +Q
Sbjct: 149 LSVTSGANPVSLKRGIDKTVQ 169
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 34.7 bits (76), Expect = 0.057
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +3
Query: 258 MIQAANGEVTITNDGATILKQMS----VIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGA 425
+I+ + G +T DG T+ K + + + A ++ +++ A + AGDGTT V+ A
Sbjct: 70 IIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAGDGTTCATVLTRA 129
Query: 426 FLDSAEKLLQKGIHPTVISDGFQKAL 503
K + G++ + G + A+
Sbjct: 130 IFTEGCKSVAAGMNAMDLRRGIKLAV 155
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 34.3 bits (75), Expect = 0.075
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +3
Query: 258 MIQAANGEVTITNDGATILKQMS----VIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGA 425
+I+ + G +T DG T+ K + + + A ++ +++ A + AGDGTT V+ A
Sbjct: 69 VIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTTCATVLTRA 128
Query: 426 FLDSAEKLLQKGIHPTVISDGFQKAL 503
K + G++ + G A+
Sbjct: 129 IFAEGCKSVAAGMNAMDLRRGISMAV 154
>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
(PP2A) 65 kDa regulatory subunit, putative similar to
protein phosphatase 2A 65 kDa regulatory subunit
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 421 PAITTTDVVPSPASIS*ARDNSTNIFAAG*ITLICFKIVAPSLVI 287
P T TD+VP+ A + + I AAG +T C +I+ P L I
Sbjct: 274 PEPTRTDLVPAYARLLCDNEAEVRIAAAGKVTKFC-RILNPELAI 317
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 574 GSCNITKFQSSFTTLNYFGTHCSASNSSSNG 666
G CN + S+F+TL G HC + G
Sbjct: 407 GYCNAVQPNSTFSTLTKCGNHCGKGKEPNQG 437
>At1g65410.1 68414.m07421 ABC transporter family protein contains
similarity to toluene tolerance protein Ttg2A GI:4336798
from [Pseudomonas putida]
Length = 345
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 506 IALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTI 625
IA VVE++ V + +EDA+ K + V QHSTI
Sbjct: 260 IASTVVEDLIRSVHMTDEDAVGKPGKIASYLVVTHQHSTI 299
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,256,640
Number of Sequences: 28952
Number of extensions: 249078
Number of successful extensions: 668
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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