Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20128
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   0.69 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.6  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    27   2.1  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   2.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.8  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    26   3.7  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    26   4.9  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   6.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.4  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    25   6.4  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   8.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.5  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   8.5  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 352 VHKLNRVFGEDKSELNWETIPDDVL 278
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 108 QLYNSVVVADYDSAVEKSKHLYEEKKS 188
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 267 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 368
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 284 CPWSPGAKVDGVLHAVHLVVSYQFV 210
           CPWS G  +DG+L  + + +S +FV
Sbjct: 52  CPWSIGNLLDGILSVLTIYIS-EFV 75


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 297 VSQLSSDLSSPKTRLSLCTSATV 365
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 470 LWENNKVYFKILNLNVTNTWYWESALTGTATIWPSESTAS 589
           LW N+ VY+ + + + T T    S  TG+ T   + +TAS
Sbjct: 737 LWANDAVYYPVSSSSTTTT----STSTGSVTTTSTTATAS 772


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 427 QGQDKPESQLEVNRSVGEQQGLLQDLEPERNQYLVLGVGTNW 552
           +G  KP +   +++++  + G L+D + E N  L    G+ W
Sbjct: 108 EGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGW 149


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/74 (22%), Positives = 28/74 (37%)
 Frame = +2

Query: 362 GLALTLSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNLNVTNTWYWES 541
           G+  TL    + DDG     +  D  +    W+   + +       I   + + T    S
Sbjct: 290 GIPQTLLLGEEADDGSDPDQETSDTAASDDGWEFGTIKQGQSNVSSITGTSTSTTTAATS 349

Query: 542 ALTGTATIWPSEST 583
           + T T T+ P  ST
Sbjct: 350 STTVTGTVIPKSST 363


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 524  TWYWESALTGTATIWPSESTASIVS 598
            T Y+ +   G ATI PS  TASI+S
Sbjct: 1217 TLYYTTLGIGIATISPSIGTASIIS 1241


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 485 KVYFKILNLNVTNTWYWESALTGTA 559
           ++Y KILNL +  T  W SA+T  A
Sbjct: 886 RIYLKILNLRLNGT-EWVSAITTKA 909


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 293 PGRCPWSPGAKVDGVLHAVHLVVSYQFVHDI 201
           P + PW PG K++     V     Y+ +H+I
Sbjct: 70  PSKIPWLPGGKINADEKLVADPSVYEMLHNI 100


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 283 VLGALEPKLMAYSMQFILLFRISLFTTFVMTSLFFSS 173
           +L +   KLM Y   F+ L   S+F TF+    F S+
Sbjct: 502 LLNSFNQKLMEYFKGFVKLDYFSIFITFLHVCSFGSN 538


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 367  ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL 257
            E V  +H L+  F ED+ E   E I  DV  A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 353 KRDGLALTLSNDVQGDDGRPAYGD 424
           K++G+  +  ND  G++G  AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,161
Number of Sequences: 5004
Number of extensions: 39949
Number of successful extensions: 200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)