Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20128
(604 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 33 0.11
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 31 0.78
At4g12900.1 68417.m02018 gamma interferon responsive lysosomal t... 27 7.2
At1g80840.1 68414.m09484 WRKY family transcription factor simila... 27 7.2
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 7.2
At1g59077.1 68414.m06670 hypothetical protein 27 7.2
At1g58766.1 68414.m06659 hypothetical protein 27 7.2
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 27 7.2
At5g64820.1 68418.m08155 hypothetical protein 27 9.6
At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) / ... 27 9.6
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 9.6
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 6 LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 185
+D + P+ +I+ + V +L S +P D+L++ L D DSA +K E K
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213
Query: 186 SEVITNV 206
+ N+
Sbjct: 214 GSIAPNL 220
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 30.7 bits (66), Expect = 0.78
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 276 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 368
PR +G S L SDL P+T + CTS V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201
>At4g12900.1 68417.m02018 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 231
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 464 IALWENNKVYFKILNLNVTNTWYWESAL 547
I W N ++++K + TNT WES +
Sbjct: 107 IRTWPNQRLHYKFIRCVETNTNAWESCV 134
>At1g80840.1 68414.m09484 WRKY family transcription factor similar
to WRKY transcription factor GB:BAA87058 GI:6472585 from
[Nicotiana tabacum]
Length = 302
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 364 TVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLMAY 248
T ALV +LNRV E+K T+ D L +LM Y
Sbjct: 30 TSALVEELNRVSAENKKLSEMLTLMCDNYNVLRKQLMEY 68
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 99 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 206
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 99 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 206
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 99 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 206
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +1
Query: 52 SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 147
+W + +L +P ++ FW + +ASS + +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117
>At5g64820.1 68418.m08155 hypothetical protein
Length = 145
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = -1
Query: 439 CLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPK 260
C+++ + G SA A + A ++ E ++V ++ +FG +WE I + ++ K
Sbjct: 15 CIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELI-QGAMQKIQMK 73
Query: 259 LMAYSMQF 236
L ++ F
Sbjct: 74 LYPPNLDF 81
>At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) /
vesicle soluble NSF attachment protein receptor VTI1a
(VTI1A) identical to SP|Q9SEL6 Vesicle transport v-SNARE
11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a)
(Vesicle soluble NSF attachment protein receptor VTI1a)
(AtVTI1a) {Arabidopsis thaliana}
Length = 221
Score = 27.1 bits (57), Expect = 9.6
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +3
Query: 144 SAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQL---SS 314
SA+ ++K SE+ + + N + KM+ + + P S ++ +L S
Sbjct: 25 SAISLDGEQKKQKLSEIKSGLENAEVLIRKMD-----LEARTLPPNLKSSLLVKLREFKS 79
Query: 315 DLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTR 437
DL++ KT + TS ++ + +A MAD TA+A R
Sbjct: 80 DLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 116 VKLLLQNVVRDVGICSIQRCH 54
+K ++N+++ G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,609,904
Number of Sequences: 28952
Number of extensions: 214800
Number of successful extensions: 921
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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