Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20127
         (531 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IBJ2 Cluster: Putative uncharacterized protein MAL7P1...    34   1.8  
UniRef50_UPI0000E4623C Cluster: PREDICTED: similar to GA19956-PA...    34   2.4  
UniRef50_O96187 Cluster: Putative uncharacterized protein PFB047...    33   5.4  
UniRef50_A0MG44 Cluster: NADH-ubiquinone oxidoreductase chain 4;...    33   5.4  
UniRef50_Q8IFN8 Cluster: Putative uncharacterized protein PFD104...    32   9.5  
UniRef50_Q4V6X7 Cluster: IP01239p; n=2; Drosophila melanogaster|...    32   9.5  

>UniRef50_Q8IBJ2 Cluster: Putative uncharacterized protein MAL7P1.146;
            n=2; Plasmodium|Rep: Putative uncharacterized protein
            MAL7P1.146 - Plasmodium falciparum (isolate 3D7)
          Length = 4894

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -2

Query: 296  NVVYYFLMYYLNECYYYIHLDNNFQAIKIQLRYSIFSKSMFNIFLSFLLITHVLV 132
            +++Y F +Y +   Y + + DNNF    IQL Y++F     +I L F +  ++++
Sbjct: 1960 SILYMFKIYKIIILYTHHYKDNNFTKNCIQLYYNLFYSVHHDISLFFFIFFYIIL 2014


>UniRef50_UPI0000E4623C Cluster: PREDICTED: similar to GA19956-PA;
           n=7; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to GA19956-PA - Strongylocentrotus purpuratus
          Length = 308

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 281 FLMYYLNECYYYIHLDN-NFQAIKIQLRYSIFSKSMFNIFL 162
           +L YY+N+CY Y+HL     +A+   + Y ++  S  N FL
Sbjct: 249 WLPYYINDCYTYVHLSGARNEALTHLVSYILWMNSAINPFL 289


>UniRef50_O96187 Cluster: Putative uncharacterized protein PFB0470w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFB0470w - Plasmodium falciparum
           (isolate 3D7)
          Length = 1346

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 290 VYYFLMYYLNECYYYIHLDNNFQAIKIQLRYSIFSKSMFNIFLSFLLITHV 138
           +Y    + L E YYY+ +DN +  ++I  R  I++  +F   + + + THV
Sbjct: 797 LYALCFFILKENYYYLSIDNLYLYLEILHRMKIYNHDIFYSIMEY-INTHV 846


>UniRef50_A0MG44 Cluster: NADH-ubiquinone oxidoreductase chain 4;
           n=1; Nymphon gracile|Rep: NADH-ubiquinone oxidoreductase
           chain 4 - Nymphon gracile
          Length = 460

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 305 WT*NVVYYFLMYYLNECYYYIHLDNNFQAIKIQLRYSIFSKSMFNIFLSFLLITHVLVTK 126
           W  N+++  + Y +   YY + L    Q     L YS +  S+  I   FLLI H++   
Sbjct: 392 WDMNLMFLLIFYVVFGSYYSVRLFQEIQLGTSLLYYSFYPISLREI---FLLIFHIIPAM 448

Query: 125 LLV 117
           LL+
Sbjct: 449 LLI 451


>UniRef50_Q8IFN8 Cluster: Putative uncharacterized protein PFD1045w;
           n=4; Plasmodium|Rep: Putative uncharacterized protein
           PFD1045w - Plasmodium falciparum (isolate 3D7)
          Length = 524

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 318 GFSSFLV*GLVIYVNAKCIIATLLYYLFYSTLKKEKFMFIFLLR*LFSFDILK*VMICIE 497
           GFS   V   +      C I  ++YY+F + ++K+K   I   R  F++ ILK + I  E
Sbjct: 296 GFSILKVLSQIYEAIFDCFILVIIYYIFNNDMQKKKEETI---RVAFTYSILKFIYILFE 352

Query: 498 I 500
           I
Sbjct: 353 I 353


>UniRef50_Q4V6X7 Cluster: IP01239p; n=2; Drosophila
           melanogaster|Rep: IP01239p - Drosophila melanogaster
           (Fruit fly)
          Length = 360

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 341 RPCNLCKCKM-YYSNIIILPILFYIEKREIYVYFFAEIIVFF*YFKVSYDLY 493
           R C++C  KM ++   I+  + F+  K  I   F+AE+  F+ +  + YDLY
Sbjct: 164 RTCHMCVLKMDHHCPWIVNCVHFHNFKYFILFLFYAEVYCFYLFCVMVYDLY 215


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 384,666,792
Number of Sequences: 1657284
Number of extensions: 6550907
Number of successful extensions: 16432
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16377
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)