Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20127
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.3  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   7.0  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   9.3  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 296  NVVYYFLMYYLNECYYYIHLDNNFQAIKIQLRYSIFSK 183
            ++ +YF   Y N  Y ++     FQ +   +RY+I+ K
Sbjct: 1137 SLTFYFQKSYFNAIYDFLLKLKRFQELFSSIRYAIYYK 1174


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 245 IHLDNNFQAIKIQLRYSIFSKSMFNIFLSFLLITHVLV 132
           IH + +F  I++  R       +  IF+SFL   +VL+
Sbjct: 270 IHFETSFNIIRLACRVIADIPQITLIFISFLFSFYVLI 307


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 395 PILFYIEKREIYVYFFAEIIVFF 463
           PIL+YI KR    YF + +  +F
Sbjct: 339 PILYYIHKRPHLDYFLSNVSQWF 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,208
Number of Sequences: 5004
Number of extensions: 32067
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)