Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20127
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_34714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_34185| Best HMM Match : DegS (HMM E-Value=0.45)                     27   9.5  

>SB_47334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 368 MYYSNIIILPILFYIEKREIYVYFFA 445
           ++YSN  + PI+F I+ RE    FF+
Sbjct: 227 LHYSNSFVNPIIFVIKMREFRAAFFS 252


>SB_34714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 372 IIATLLYYLFYSTLKKEKFMFIFLLR*LFSFDI 470
           ++ TLL+Y++  TL K+ F    +L  L SF I
Sbjct: 229 VLGTLLFYIYLKTLAKKTFSHSTVLLVLISFII 261


>SB_34185| Best HMM Match : DegS (HMM E-Value=0.45)
          Length = 348

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 260 ECYYYIHLDNNFQAIKIQLRYSIFSKSMFNIFLS 159
           EC  Y HL+  ++ +K +L  S       N+FLS
Sbjct: 53  ECQTYSHLEKQYKKLKRELEKSRQEYENINLFLS 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,884,082
Number of Sequences: 59808
Number of extensions: 191132
Number of successful extensions: 423
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)