Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20126
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0392 + 24891478-24891612,24891875-24893092                       28   4.5  
10_08_1011 + 22234306-22234388,22235107-22235226,22235401-222355...    28   6.0  
07_01_1140 - 10689155-10689580,10690954-10691106                       27   7.9  
01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352...    27   7.9  

>04_04_0392 + 24891478-24891612,24891875-24893092
          Length = 450

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 227 FNYRIIVITRYFGHVYD*NDWKIVIDKNNPIKKQWITLICLHPQ 96
           F+  + V+ RYFGH+    +  ++ D   P +K  I     HP+
Sbjct: 190 FSEEVAVLNRYFGHLKSGGNAYVIGDPAKPGQKWHIYYATQHPE 233


>10_08_1011 +
           22234306-22234388,22235107-22235226,22235401-22235515,
           22235582-22235675,22236138-22236358
          Length = 210

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 109 VYTLNYGPYKHFVHKSRGA 53
           +YT++YG Y  +V K+RGA
Sbjct: 175 LYTMHYGEYAAYVKKNRGA 193


>07_01_1140 - 10689155-10689580,10690954-10691106
          Length = 192

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 91  GPYKHFVHKSRGALR*PQFDEGFL 20
           GP KH  H  RG L  P FDE F+
Sbjct: 128 GPIKHITHTCRG-LSGPPFDEVFI 150


>01_06_1448 -
           37434159-37434242,37434875-37434968,37435077-37435250,
           37435536-37435627,37435947-37436056,37437274-37437349,
           37437445-37437537,37437617-37437817
          Length = 307

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 290 IVRQYLIKTRYYIKQKECTTIFNYR--IIVITRYFGHVY 180
           IV    IK   Y+K KECT I +     +++ R+F  +Y
Sbjct: 58  IVATDSIKNTVYVKAKECTEIVSMEEFAVILGRHFTSLY 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,091,813
Number of Sequences: 37544
Number of extensions: 178704
Number of successful extensions: 241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)