Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20126
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine rece...    28   5.4  
Z81078-1|CAB03075.3|  441|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z69659-3|CAA93484.1|  231|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine
           receptor, class v protein7 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 153 YNDFPIVLIIDMSKITRNYYYAVIKNSGAFFLFYI 257
           Y  F I +IID+  +  NY+  V    G F  FY+
Sbjct: 53  YQIFTIGIIIDVISLVNNYFGCVFPAKGYFRDFYL 87


>Z81078-1|CAB03075.3|  441|Caenorhabditis elegans Hypothetical
           protein F36H2.2 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 120 YPLLFDGIIFIYNDFPIVLIIDMSKITRNYYYAVIKNSGAFFLFYIVSCFN*ILTHYNFT 299
           +P  +   + +   F  VL   MS + +     VI N   +F F ++ CF  + T+Y  T
Sbjct: 159 FPSQYTQAVMVGQSFAGVLAALMSILCQAVTSDVILNGQMYFGFSLIMCFISLATYYYLT 218


>Z69659-3|CAA93484.1|  231|Caenorhabditis elegans Hypothetical
           protein F07C6.3 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 494 ITKIFFFSDNRKSKNCFLFLDXRYVRSVNH 405
           ITKI+  +   K KN + + D RY+ S ++
Sbjct: 138 ITKIYGAAQATKYKNLYAYFDSRYINSFSY 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,040,154
Number of Sequences: 27780
Number of extensions: 207223
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)