Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20126
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17565.1 68417.m02626 F-box family protein contains F-box dom...    28   3.8  
At2g18690.1 68415.m02177 expressed protein                             28   3.8  

>At4g17565.1 68417.m02626 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 378

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -2

Query: 269 KTRYYIKQKECTTIFNYRIIVITRYFGHVYD*NDWKIVIDKNNPIKKQWI 120
           K +YY    +     +  ++V+     H YD + W+  I + NP+ ++W+
Sbjct: 250 KNKYYRISHQMVMSLSGEVVVVK--IMHYYDLSRWRFRIFELNPLTQRWV 297


>At2g18690.1 68415.m02177 expressed protein
          Length = 322

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 147 FIYNDFPIVLIIDMSKITRNYYYAVIKNSGAFFLFYIVSC 266
           F   DFP++ +         Y+Y  + + G  FLF+I+ C
Sbjct: 126 FNIKDFPVLSLKSWKGPLVTYFYIALFSLGFGFLFFIILC 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,939,623
Number of Sequences: 28952
Number of extensions: 174518
Number of successful extensions: 303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)