Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20125
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    31   0.19 
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    27   2.3  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   2.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.0  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   5.3  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    25   7.0  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    25   9.3  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    25   9.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   9.3  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +1

Query: 391 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 480
           R++HEA+G+  FG + P     E+FH++ SG  +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 553 DRPSRPDCLYRSIASCLYDINSLLDVLVYRILSNGSVQVAH 431
           +RP+ P+ L   I  C  D NS+    VY  LS+GS+   H
Sbjct: 541 ERPTYPEYLKIPILIC-GDFNSVQGSGVYDFLSSGSISQNH 580


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 401 MKHTDLEDSVMRNLNASITQYPVDKN 478
           +K   +EDS + N+ AS+  + VDKN
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN 441


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 454  NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 350
            +GS+ + H++ FQ    H T  +  +   EY   E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 526 YRSIASCLYDINSLLDVLVYRILSNGSVQ--VAHNRIFQVRMLHVTSDAHSQFSHEYD 359
           Y+S+ SCL ++  LL   +   + N +VQ  V  N I +     + S   SQFS E D
Sbjct: 7   YKSLRSCLVNVPELLLESISEPVQNYAVQAVVCKNDIKKTFYFGI-SGIPSQFSFEID 63


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 242 ELVEVLIGEVHVRIRVYFSPDAN 174
           E++E   GE  + +R++F+P+A+
Sbjct: 81  EVIETGWGEFDIMVRIFFAPEAH 103


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 340 VFSIPLDHIRG*TGCGHRWLHEAYGL 417
           V ++PLDH+ G +     W +   GL
Sbjct: 55  VLALPLDHVTGSSESMENWFYSILGL 80


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 502 TNNLQCCGINSPADWADHGLPIPSTC 579
           T  +  C I S   WA HG+P P  C
Sbjct: 75  TKFINHCAI-SHTRWATHGIPSPINC 99


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 505 NNLQCCGINSPADWA 549
           NN +C GIN  A+WA
Sbjct: 313 NNSECFGINLDANWA 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,098
Number of Sequences: 5004
Number of extensions: 49284
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)