Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20125
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 33 0.17
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 33 0.17
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 32 0.30
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z73971-4|CAA98254.1| 205|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z92781-4|CAB82208.1| 319|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 29 2.1
AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich ... 29 2.1
AC006676-6|AAK71384.2| 652|Caenorhabditis elegans Hypothetical ... 29 2.1
Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 29 2.8
U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical pr... 29 3.7
X98132-1|CAA66831.1| 387|Caenorhabditis elegans N-acetyllactosa... 29 3.7
U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine rec... 29 3.7
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z66495-9|CAH19100.1| 670|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z66495-8|CAA91274.1| 680|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 27 8.6
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 53.2 bits (122), Expect = 2e-07
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +2
Query: 299 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 478
CCGA++EN+C+ ++F+V L ++ E+A I GY H + L + +Y +
Sbjct: 71 CCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRYHESRG 130
Query: 479 VQKTID 496
V+ D
Sbjct: 131 VESAWD 136
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +3
Query: 90 LEGGMSCVKYLMFCFNLLFAITGLIILIVG 179
+EGG++ VKYL+F NL+ + GL ++IVG
Sbjct: 2 VEGGVTIVKYLLFLANLVLWVGGLSLIIVG 31
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 397 LHEAYGLGRFGYAQPERFHYSISGRQERPEDY*YHTNNL-QCCGINSPADWADHGLPIPS 573
LH+++ LG Q Y S E D T+ L +CCG+ + +DW IP
Sbjct: 106 LHDSFRLGIGNQLQTGMVRYHESRGVESAWD---KTHQLFECCGVTNSSDWLTF-TTIPD 161
Query: 574 TCC 582
+CC
Sbjct: 162 SCC 164
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +2
Query: 299 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 478
C G+++EN + +S L ++ +AE + G+ Y L++ + LN + Y D +
Sbjct: 103 CVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVGYRDDPD 162
Query: 479 VQKTIDIIQTT 511
+Q ID +Q T
Sbjct: 163 LQLLIDSMQET 173
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 108 CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 215
CVKY +F FN++F + G +L+ G+ A+I ++N
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVN 72
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 299 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI-TQYPVDK 475
C GA K N C + F L++ F ELA + + K ++ V ++ +I +Y +
Sbjct: 75 CIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTIRNRYSSET 134
Query: 476 NVQKTIDIIQ 505
+ D +Q
Sbjct: 135 AFKDAFDTVQ 144
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 81 TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 215
TM L +K+ +F FNL+F + GLI L +G+ ++ Y N
Sbjct: 8 TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +2
Query: 302 CGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI-------TQ 460
CGAV + +++ F +FL+ F+A++A+G + + D SV N+ + T
Sbjct: 46 CGAVNRSRFLLLAFVMFLIGTFLADVAMGTLS-LFYKDKVYSVKENVREIVKSKYGVMTS 104
Query: 461 YPVDKNVQKTIDIIQ 505
P +K V + ID +Q
Sbjct: 105 EPENKMVTEFIDKLQ 119
>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
F33H2.5 protein.
Length = 2144
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 101 STFESHCYSIKYYRQIVLLRNKMIHTSAKQAH 6
+TF S C S K ++ + NKM+H +A AH
Sbjct: 1941 ATFRSDCISQKISHRLYRIVNKMVHNNADIAH 1972
>Z73971-4|CAA98254.1| 205|Caenorhabditis elegans Hypothetical
protein C50H2.6 protein.
Length = 205
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +1
Query: 433 AQPERFHYSISGRQERPEDY*YHTNNLQCCGINSPADWADHGL----PIPSTCCSAQEIN 600
A+P+ Q +D + N ++C D A L P+P+T CSA I+
Sbjct: 49 ARPQDVLMMSENLQASEDDLTFINNMIKCAHNQISMDNAFLALGLVPPLPATFCSAASID 108
Query: 601 DGVVAACTENST 636
+ V +C ST
Sbjct: 109 NNAVKSCKNKST 120
>Z92781-4|CAB82208.1| 319|Caenorhabditis elegans Hypothetical
protein F09C3.5 protein.
Length = 319
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = -2
Query: 541 RPDCLYRSIASCLYDINSLLDV---LVYRILSNGSVQVAHN-RIFQVRMLHVTSDAHSQF 374
RP Y S +C+ D+NS+ ++ IL+ + + N F ++LH +D QF
Sbjct: 136 RPRIQYLSFKNCMLDLNSISEIFKGFPIGILNISAERYDSNENTFYSQILHNFADQTEQF 195
Query: 373 SHEYDQEEY*KRYYHAVVLFD 311
+ EY + ++ H ++ D
Sbjct: 196 AIEYGGIFHNRQQIHELLARD 216
>Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical
protein C50H2.1 protein.
Length = 929
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 116 LYTGHSTFESHCYSIKYYRQIVLLRNKMIHTSAKQAHR 3
L T H T+ HC KY + + N +AK+ H+
Sbjct: 300 LETAHFTYPHHCCLFKYVDDVTMNDNGKYQRNAKEIHK 337
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +2
Query: 305 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSV 430
GAV + ++ + +F++I+F+ E+A+GI +K + +V
Sbjct: 91 GAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTV 132
>AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich
repeat-containingG protein-coupled receptor protein.
Length = 929
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 116 LYTGHSTFESHCYSIKYYRQIVLLRNKMIHTSAKQAHR 3
L T H T+ HC KY + + N +AK+ H+
Sbjct: 300 LETAHFTYPHHCCLFKYVDDVTMNDNGKYQRNAKEIHK 337
>AC006676-6|AAK71384.2| 652|Caenorhabditis elegans Hypothetical
protein M04F3.5 protein.
Length = 652
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -1
Query: 614 ATTPSLISWAEQHVLG--MGRP*SAQSAGLFIPQHCKLFV*YQ*SS 483
A TP+ S AEQ + G MG S SAGL+ P H + F YQ SS
Sbjct: 587 AATPTAPSVAEQRMNGSTMGSRQSLDSAGLYDPAHPQQF--YQMSS 630
>Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical
protein C17G1.8 protein.
Length = 291
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Frame = +1
Query: 511 LQCCGINSPADWA-----DHGLPIPSTCCSAQEIN 600
LQCCG+++ DW + L P +CC Q +
Sbjct: 144 LQCCGVDNYTDWHYSVHWPNNLYTPDSCCDPQHFD 178
>U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical
protein T27B1.2 protein.
Length = 470
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 146 KQKIEAKHEVLYTGHSTFESHCYSIKYYRQIVLLRNKMIHTSAK 15
K ++E +H+ +TG FE + ++ R+ L +K IH+ AK
Sbjct: 96 KMELE-EHQNSHTGQKPFECDTCNARFNRRSTLWNHKRIHSDAK 138
>Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical
protein W02B12.11 protein.
Length = 387
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 311 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 487
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 488 T 490
+
Sbjct: 59 S 59
>X98132-1|CAA66831.1| 387|Caenorhabditis elegans
N-acetyllactosamine synthase protein.
Length = 387
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 311 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 487
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 488 T 490
+
Sbjct: 59 S 59
>U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 29 protein.
Length = 348
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 516 LQVVCMISIVFWTFLSTGY 460
LQ++C I+I FWTF + Y
Sbjct: 152 LQIICPIAIQFWTFHDSDY 170
>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
protein F17C11.10 protein.
Length = 1101
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 504 KQLAMLRYKQSGRLGRSRSAHTEHVLLRPG 593
+QL + Y G+L SA+T HVL PG
Sbjct: 679 EQLDWIAYSNQGKLAVMDSAYTVHVLSAPG 708
>Z66495-9|CAH19100.1| 670|Caenorhabditis elegans Hypothetical
protein C36A4.9b protein.
Length = 670
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 496 YHTNNLQCCGINSPADWADHGLPI 567
Y + L+C G++SP +W D P+
Sbjct: 257 YDSEMLKCAGVDSPVEWMDSEDPL 280
>Z66495-8|CAA91274.1| 680|Caenorhabditis elegans Hypothetical
protein C36A4.9a protein.
Length = 680
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 496 YHTNNLQCCGINSPADWADHGLPI 567
Y + L+C G++SP +W D P+
Sbjct: 267 YDSEMLKCAGVDSPVEWMDSEDPL 290
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -2
Query: 199 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPPSRAIVI---QLNITAKLY 50
+F L P + + P++ + QN+R +IP AI I QL + LY
Sbjct: 54 KFYKILEPGLNFLLPIIDKIKFVQNLREIAIEIPEQGAITIDNVQLRLDGVLY 106
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 323 HCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYP 466
H + + S LLII A G+ + H +D V+RN+N I Q P
Sbjct: 568 HAIRLIRSGGLLIINQALNGGGVMSSIDHMTNDDRVIRNMNIRIKQDP 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,169,465
Number of Sequences: 27780
Number of extensions: 286544
Number of successful extensions: 967
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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