Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20125
(641 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 51 8e-09
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.8
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 5.8
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 5.8
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 51.2 bits (117), Expect = 8e-09
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +2
Query: 299 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNLNASITQYPVD 472
CCGA++E+HCM ITF+ FLL I + ++AV + + +K+ D ++ Y ++
Sbjct: 70 CCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLN 129
Query: 473 KNVQKTIDIIQ 505
+ ID IQ
Sbjct: 130 SESKDFIDFIQ 140
Score = 40.3 bits (90), Expect = 2e-05
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +1
Query: 508 NLQCCGINSPADWADHGLPIPSTCCSAQEIN 600
NLQCCG++S +D+ D PIP++CC++ E N
Sbjct: 142 NLQCCGVHSLSDYNDK--PIPASCCNSPENN 170
Score = 37.9 bits (84), Expect = 8e-05
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 99 GMSCVKYLMFCFNLLFAITGLIILIVGI 182
GM +KYL+F FN +FA+ GL IL +G+
Sbjct: 4 GMGMIKYLLFIFNFVFAVCGLGILTLGV 31
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 104 VLCKVPHVLLQ 136
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 104 VLCKVPHVLLQ 136
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 104 VLCKVPHVLLQ 136
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 104 VLCKVPHVLLQ 136
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 104 VLCKVPHVLLQ 136
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 104 VLCKVPHVLLQ 136
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 104 VLCKVPHVLLQ 136
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.8
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 104 VLCKVPHVLLQ 136
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 5.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 606 AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 508
A+ID L A R GP GR+V +A L V
Sbjct: 967 ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 999
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 5.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 606 AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 508
A+ID L A R GP GR+V +A L V
Sbjct: 963 ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 995
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,266
Number of Sequences: 438
Number of extensions: 3510
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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