Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20124
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0419 - 3316866-3318172,3318249-3318360 31 0.57
04_04_1425 + 33463039-33463330,33464370-33464460,33465299-334656... 30 1.3
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 3.0
09_02_0444 - 9444340-9444829,9444985-9445688 28 5.3
01_06_0934 - 33167569-33167720,33167820-33168069 28 7.0
11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881... 27 9.3
10_08_0485 + 18235597-18236256,18236353-18236400,18236522-182366... 27 9.3
08_01_0009 + 68825-68950,72571-72669,72841-72929,74971-75087,757... 27 9.3
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187... 27 9.3
04_04_0095 - 22775340-22776017 27 9.3
03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467 27 9.3
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 27 9.3
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 31.5 bits (68), Expect = 0.57
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +2
Query: 215 PPTPLEPYPCQTRGTSTAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDGEE 379
P TP P +T A EP + P A E E PK S + DY + GEE
Sbjct: 359 PETP--PVESETPAEEQAPVQEPPAADETPAAGEPEEQPKPRSSDSEDYSTSGEE 411
>04_04_1425 +
33463039-33463330,33464370-33464460,33465299-33465656,
33465771-33465944,33466403-33466607,33466717-33466784,
33467279-33467360,33467513-33467549,33467822-33467913,
33469219-33469294,33469402-33469585,33469859-33469867
Length = 555
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Frame = +2
Query: 269 IDVEPAFVENFPP-------AQEFEVTPKALVSATSDYESDGEEAFPELEVPEPIEVSKN 427
+D+ +++++ PP +Q+F+ P A + DYE + + P +V E N
Sbjct: 257 VDLAKSYMQSLPPWQSPFLGSQKFKTPPSAGLHMY-DYEGKSKYSLPSSKVTTKEEYLSN 315
Query: 428 FWTVSDRKKEVLLDAGALGDVPAVYKV 508
FW + + L G+ G P KV
Sbjct: 316 FWENLEESRRSRL--GSSGSSPDASKV 340
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 293 ENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEVPEPIEVSKNFWTVSD 445
ENF + E+ KA++ A Y G FPE + ++++NFW V+D
Sbjct: 1180 ENFLSSGGKEILIKAVIQAIPVYVM-GLFKFPESVCDDLTKMTRNFWWVAD 1229
>09_02_0444 - 9444340-9444829,9444985-9445688
Length = 397
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 234 LTRARLAGHPLPSMWNQRSLKTFLQH 311
LTR R A PLP M + R L FL+H
Sbjct: 171 LTRRRRAITPLPEMRSHRCLGAFLKH 196
>01_06_0934 - 33167569-33167720,33167820-33168069
Length = 133
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 205 VSSRCISMAELASIFP*KA*YDKILKRLRFVRISRTVDSTN 83
VSS+C+S AE++S P K KI+K F R+ N
Sbjct: 21 VSSKCLSAAEVSSDGPCKTPLLKIMKTCAFTSALRSKPRVN 61
>11_06_0529 +
24687027-24687064,24687150-24687610,24687709-24688124,
24688688-24688860,24689733-24689868,24689914-24690264,
24691170-24691344,24691761-24691822
Length = 603
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +3
Query: 393 WRSLSQLRLAKTSGPLVIGKKKYYWTQVLWEMCPPFTKCSASAPSDAGYWGVHRPP 560
WRS + RL + + +++ W P +A+AP+D RPP
Sbjct: 93 WRSRTMRRLPSLAPTMSSTLRRFSIRSGAWPQWPSAASAAAAAPADGSQACALRPP 148
>10_08_0485 +
18235597-18236256,18236353-18236400,18236522-18236644,
18237062-18237211,18237702-18237873,18237965-18238025,
18238129-18238237
Length = 440
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +2
Query: 197 RRDSFGPPTPLEPYPCQTRGTSTAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDGE 376
RR++ PP+P + C GT DVE FV+ P V + L++ S+ E DG
Sbjct: 79 RREATPPPSPQDAVDCVGTGT----DVE-CFVDG--PGAGAGVGAEPLLARVSEEEEDGV 131
Query: 377 EA 382
A
Sbjct: 132 SA 133
>08_01_0009 +
68825-68950,72571-72669,72841-72929,74971-75087,
75747-75906,76419-76549,76810-76906,77584-77877
Length = 370
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 469 RRCSGRCARRLQSAQPALHQMPVIGVYI 552
RRC G +R+ ++ L M VIG+YI
Sbjct: 31 RRCGGAASRKALVSRMLLGGMTVIGIYI 58
>07_03_0244 -
15715047-15715163,15716672-15716824,15718629-15718748,
15718830-15719045,15719902-15719968,15720051-15720125,
15720607-15720698,15721053-15721154,15721642-15721711,
15721788-15721846,15721947-15722031,15722443-15722520,
15722627-15722725,15722819-15722910,15725572-15725661,
15725937-15725995,15727966-15728281,15728627-15728702,
15729998-15730308,15730577-15730634,15731082-15731092,
15731247-15731397,15733372-15733778
Length = 967
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 404 EPIEVSKNFWTVSDRKKEVLLDAGALGD-VPAVYKVLSQRS 523
E ++ +N W V D +VLLD G++ + AV VL+ S
Sbjct: 739 EAVKFKRNSWEVWDNYSKVLLDTGSIQQTLEAVKMVLNLSS 779
>04_04_0095 - 22775340-22776017
Length = 225
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 280 FHIDGSGCPASLARVRFQRRWRAKGVSSRCISM 182
F G G PAS+ V F+ RWR + S + M
Sbjct: 80 FERRGGGAPASVGGVVFELRWRPRRRSPAFLGM 112
>03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467
Length = 640
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 302 PPAQEFEVTPK---ALVSATSDYESDGEEAFPELEVPEPIEVSKNFWTVSDRKKEVLLDA 472
PPA TP+ + A +D E+DG + +L++ + N W V R + L
Sbjct: 45 PPACRCRATPQWQLDFLGAEADTEADGGDDDDDLDLDLSLPAETNDWCVRAR-RSALRSI 103
Query: 473 GALGDVPAVYKVLS 514
A G P++ ++++
Sbjct: 104 EARGLSPSLQRMVA 117
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 118 TGAVLKFYHTKLSKGRCSLTQP-WKCNAKRLLWPSNA 225
T KF H+ ++K RCS+ + W +RL+ S +
Sbjct: 140 TSFAAKFVHSSINKNRCSINRVLWTPTGRRLITGSQS 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,378,906
Number of Sequences: 37544
Number of extensions: 462535
Number of successful extensions: 1432
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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