Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20124
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1379| Best HMM Match : FHA (HMM E-Value=3.7e-18)                    30   1.3  
SB_27383| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)                 29   4.1  
SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_28631| Best HMM Match : Drf_FH1 (HMM E-Value=0.35)                  27   9.5  
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)               27   9.5  

>SB_1379| Best HMM Match : FHA (HMM E-Value=3.7e-18)
          Length = 375

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 293 ENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEVPEP 409
           E  PP+Q+ EVT   L    +D +   EE+FPE+   EP
Sbjct: 21  EMAPPSQQ-EVTKAKLRPLANDNKEKKEESFPEIPYKEP 58


>SB_27383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 264 VDVPRVWHG*GSKGVGGP 211
           VD+P+VWH  G KG  GP
Sbjct: 118 VDLPKVWHASGRKGRKGP 135


>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 140 IILSFLREDAR*LSHGNATRRDSFGPPTPLEP 235
           +ILSF    AR  SHG  +RR   G PT   P
Sbjct: 164 LILSFALRFARLESHGERSRRSGGGLPTTFTP 195


>SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)
          Length = 234

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 293 ENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEV 400
           ENFPP +E +   K +V    D   DG+ +  ELEV
Sbjct: 58  ENFPP-EESKQKLKIIVETKIDVNKDGKVSLQELEV 92


>SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -1

Query: 454 FFPITNGP---EVFANLNWLRDLQF 389
           FFP +NGP   E  A +NW+RD  F
Sbjct: 202 FFPSSNGPPQPETRAVMNWIRDYPF 226


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
 Frame = +2

Query: 155  LREDAR*LSHGNATRRDSFGPPTP------LEPYPCQTRGTSTAIDVEPAFVENFPPAQE 316
            LR      + GNA +R + GP         +   P +  G+    D+ P  +     + +
Sbjct: 696  LRNQCTCKTTGNAPQRRTSGPNRSRKRRLAVPSTPTKRHGSGRFKDLPPRKIRRDNSSHD 755

Query: 317  FEVTPKALVSATSDYESDGEEAFPELEVPEPIEVSKNFWTVSDRKKEVLLDAGALGDVPA 496
               +  +   ++S ++SD +E+F   E+P    VS+   +  +   E+ L    +GD  A
Sbjct: 756  SFSSSSSCCFSSSSFDSDSQESFSTDELPVETRVSEPIESRFEGLHELTL-CSVIGDEGA 814

Query: 497  V 499
            +
Sbjct: 815  I 815


>SB_28631| Best HMM Match : Drf_FH1 (HMM E-Value=0.35)
          Length = 240

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +2

Query: 227 LEPYPCQTRGTSTAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEVPE 406
           ++P P       T  ++E   +E+ PP ++  V P        DY + G+   PE+  P 
Sbjct: 93  VKPKPVSDTVAMTTDNLETVAMEDDPPEEDTPVEPSV---TRLDY-NHGQPVIPEVGPPP 148

Query: 407 PIEVSKNF 430
           P+   + F
Sbjct: 149 PLPGMQTF 156


>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
          Length = 2261

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 314 EFEVTPKALVSATSDYESDGEEAFPELEVPEPIE 415
           EFE + +A + A S    +G+  FP  +VP  +E
Sbjct: 423 EFEASMRANIPAASPGPPEGDVGFPSRDVPIDVE 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,158,341
Number of Sequences: 59808
Number of extensions: 487885
Number of successful extensions: 1427
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)