Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20124
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50250.1 68416.m05495 hypothetical protein predicted protein,...    31   0.63 
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to...    31   0.83 
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    29   1.9  
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    29   1.9  
At5g35640.1 68418.m04254 hypothetical protein contains Pfam prof...    29   3.4  
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    28   4.4  
At3g19780.1 68416.m02504 expressed protein                             27   7.8  
At1g55300.1 68414.m06317 TATA-binding protein-associated factor ...    27   7.8  

>At3g50250.1 68416.m05495 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 148

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 286 RWFHIDG-SGCPASLARVRFQRRWRAKGVSSRCISMAELASIF 161
           RW   DG SGCPA++  VR +RRW +      C ++A  A++F
Sbjct: 18  RWLSSDGDSGCPATVV-VRRRRRWLSGDGDGGCPAVA--AAVF 57



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 286 RWFHIDGSG-CPASLARVRFQRRW 218
           RW   DG G CPA  A V  QRRW
Sbjct: 39  RWLSGDGDGGCPAVAAAVFRQRRW 62


>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
            At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
            At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
            At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
            At1g52020, At3g24390,  At4g05280, At1g25886, At4g03300;
            contains Pfam profile PF02902: Ulp1 protease family,
            C-terminal catalytic domain
          Length = 1158

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
 Frame = +2

Query: 212  GPPTPLEPYPCQTR-GTSTAIDVEPAFVENFPPAQEFEVTPKALVSATSD-YE-SDGE-- 376
            GP    EP    T  G     D +   V+N   A++   + +A  S + + YE SDG+  
Sbjct: 717  GPKDVAEPGLVGTHTGADEIADADIEMVDNPSEARDASASTEANGSESEETYEPSDGDTA 776

Query: 377  --EAFPELEVPEPIEVSKNFWTVSDRKKEVLLDAGALGDVPAVYKVLSQRSIRCRLLGCT 550
              EA  E ++   +EV     T SD  +E  LD  A+GD+ A   +       C + G  
Sbjct: 777  HVEAAGESKLVTVMEVEIPEKTHSDVIRE--LDTKAVGDLAAATDLEVVMEEPCIVEGSV 834

Query: 551  STPVSEPASDQS 586
             T    P SD++
Sbjct: 835  ETEDPNPGSDEA 846


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase
           (ATHIM) identical to SP|P34881 DNA
           (cytosine-5)-methyltransferase AthI (EC 2.1.1.37)
           {Arabidopsis thaliana}
          Length = 1534

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 356 DYESDGEEAFPELEVPEPIEVSKNFWTV----SDRKKEVLLDAGALGDVPA 496
           + E +GE    E  VPEP+EV K         S  K+E+  D  +LG   A
Sbjct: 672 EVEEEGENGLTEDTVPEPVEVQKPHTPKKIRGSSGKREIKWDGESLGKTSA 722


>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from {Mus musculus} SP|P70704, {Bos
            taurus} SP|Q29449; contains InterPro accession IPR005834:
            Haloacid dehalogenase-like hydrolase
          Length = 1107

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 188  NATRRDSFGPPTPLEPYPCQTRGTSTA 268
            NATRR SFGP TP E +  Q+R +S++
Sbjct: 1073 NATRR-SFGPGTPFEFFQSQSRLSSSS 1098


>At5g35640.1 68418.m04254 hypothetical protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 192

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 504 KCSASAPSDAGYWGVHRPPCPNRLQIK 584
           +CSA A + + +W ++R P PN + ++
Sbjct: 26  RCSAGAAATSVWWDINRCPLPNDVDVR 52


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 118 TGAVLKFYHTKLSKGRCSLTQP-WKCNAKRLLWPSNA 225
           T    KF H  L+K RCS+ +  W  + +RL+  S +
Sbjct: 108 TSFAAKFVHASLNKNRCSINRVLWTPSGRRLITGSQS 144


>At3g19780.1 68416.m02504 expressed protein
          Length = 1014

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 261 PLPSMWNQRSLKTFLQHRNSKLLLKRLCQQRVTMKATEKR 380
           PL  + + +SLK FLQ  +  LLL   C    T+ +  K+
Sbjct: 139 PLKHLKSPKSLKDFLQSSDKALLLFEFCGWTTTLMSELKK 178


>At1g55300.1 68414.m06317 TATA-binding protein-associated factor
           TAFII55 family protein contains Pfam profile: PF04658
           TAFII55 protein conserved region
          Length = 203

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 188 NATRRDSFGPPTPLEPYPCQTRGTSTAIDVEP 283
           NA+++ S   PTP+E       GTS    VEP
Sbjct: 160 NASKKVSSSSPTPVEKPEAPETGTSNPTGVEP 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,688,782
Number of Sequences: 28952
Number of extensions: 338027
Number of successful extensions: 1001
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)