Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20123
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    25   0.48 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    24   1.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.6  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   6.0  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 240 CPCTHSSSVQTPSTSGILCLEEKQQPEL 157
           C CTH   +   +   I+ ++E QQP L
Sbjct: 566 CMCTHKVDIPLNAIVEIVLVDEVQQPNL 593


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 263 SRTRIMHKNLKAKEEGQCSNGSCKI 337
           ++TR++H++L A+    C N + K+
Sbjct: 609 AKTRVVHRDLAARNVLVCENHTVKV 633


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 240 CPCTHSSSVQTPSTSGILCLEEKQQPEL 157
           C CTH   +   +   ++ ++E Q P L
Sbjct: 566 CMCTHQVDIPLNAIVEVVLVDEVQSPNL 593


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 661 KKIKFGSISLLKI 623
           KKIKF S  +LKI
Sbjct: 351 KKIKFSSFGMLKI 363


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,394
Number of Sequences: 336
Number of extensions: 2534
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)